EY756212

Overview
NameEY756212
Unique NameEY756212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756212_ssr12 microsatellite EY756212_ssr12:12..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2804 contig Csv1_Contig2804:102..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756212 vs. ExPASy Swiss-Prot
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 9.952e-25
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:   74 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 334
            V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
[Close]
BLAST of EY756212 vs. ExPASy Swiss-Prot
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 9.952e-25
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:   74 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 334
            V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
[Close]
BLAST of EY756212 vs. ExPASy Swiss-Prot
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 9.952e-25
Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 2 
Query:   74 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLR 334
            V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++T+R +P LFVRGDGV+LV+PPLR
Sbjct:   14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100
[Close]
BLAST of EY756212 vs. ExPASy Swiss-Prot
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.877e-23
Identity = 55/89 (61.80%), Postives = 62/89 (69.66%), Query Frame = 2 
Query:   74 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPPLRTA 340
            V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL                     R  +R +  LFVRGDGVIL+SPPLRT+
Sbjct:    9 VEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97
[Close]
BLAST of EY756212 vs. ExPASy Swiss-Prot
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.160e-19
Identity = 46/85 (54.12%), Postives = 55/85 (64.71%), Query Frame = 2 
Query:   74 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRTTRRTVPFLFVRGDGVILVSPP 328
            V EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG                    +T R+    LFVRGD VIL++PP
Sbjct:    7 VAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91
The following BLAST results are available for this feature:
BLAST of EY756212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM3_MOUSE9.952e-2563.22U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu... [more]
LSM3_HUMAN9.952e-2563.22U6 snRNA-associated Sm-like protein LSm3 OS=Homo s... [more]
LSM3_BOVIN9.952e-2563.22U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta... [more]
LSM3_DICDI1.877e-2361.80Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
LSM3_SCHPO8.160e-1954.12Probable U6 snRNA-associated Sm-like protein LSm3 ... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-H10-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756212 ID=EY756212; Name=EY756212; organism=Citrus sinensis; type=EST; length=530bp
CCACGCGTCCGGAGAGAGAGAGAGAGCGAGGGAGAGCAACTGAGCAAGAA
TGGCAAGCGAAGAAGAAAGCGCAGTGAAGGAGCCGTTGGATCTCATAAGA
CTCAGCCTCGACGAGCGCATCTACGTTAAGCTCCGATCCGACCGTGAACT
CCGCGGCAAACTCCATGCATATGATCAACATTTAAACATGATTCTTGGGG
ACGTCGAAGAAGTTGTTACTACAGTGGAAATCGATGATGAAACTTATGAA
GAGATTGTTCGGACTACAAGGCGTACTGTTCCGTTTCTCTTTGTAAGAGG
GGATGGTGTCATCCTAGTTTCTCCTCCACTGAGGACAGCTTAAATCGAAG
AACAGGGTGCACACTCGATGAAGAAACCACCAATTTTACATTAATGCTTT
TCTTTCTGTCACTGTTTTTGCATTTCCTAGTTTAACATCTCAAACTGATT
ACATGCTAAGTTGGCAATCATGAAATATCACATGTTGTTACGGCGGGCCT
TGAATTTGTATTAAAAAAAAAAAAAAAAAA
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