EY756197

Overview
NameEY756197
Unique NameEY756197
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8139 contig Csv1_Contig8139:993..1598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.533e-39
Identity = 78/106 (73.58%), Postives = 89/106 (83.96%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDTV+EG+TGF MG+F+VDCE VDP DV  V TTV RALA YGT A  EM+KN M+Q+LSWKGPAK WE  LL+L VAGSEPG++G+EIAPLAKENVATP
Sbjct:  503 ASTGGLVDTVKEGYTGFHMGAFNVDCETVDPEDVLKVITTVGRALAMYGTLAFTEMIKNCMSQELSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 608          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.533e-39
Identity = 77/106 (72.64%), Postives = 89/106 (83.96%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDTV EGFTGF MG+F+V+C  VDP DV  ++TTV RALA YG+ A  EM++N MAQDLSWKGPAK WE+ LL+L V+GSEPG+DGEEIAPLAKENVATP
Sbjct:  503 ASTGGLVDTVTEGFTGFHMGAFNVECATVDPADVQKIATTVERALAAYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.240e-38
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDTV+EG+TGF MG+F+V+C+ VDP DV  + TTV RALA YGT A AEM+KN M+++LSWK PAKKWE  LL L  +GSEPG++GEEIAPLAKENVATP
Sbjct:  502 ASTGGLVDTVKEGYTGFHMGAFNVECDVVDPADVLKIVTTVARALAVYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.283e-37
Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDTV+EG+TGFQMG+  V+C+ +D  DVAA+  TV RAL TY T AL EM+ N MAQDLSWKGPA+ WE+ LL+LEV GSEPG +GEEIAPLAKENV TP
Sbjct:  503 ASTGGLVDTVKEGYTGFQMGALHVECDKIDSADVAAIVKTVARALGTYATAALREMILNCMAQDLSWKGPARMWEKMLLDLEVTGSEPGTEGEEIAPLAKENVPTP 608          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 9.963e-36
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            +S GGLVDTV EG TGF MGSF+V+ E VDP DVAAV + V RAL  Y T     M++N MAQDLSWKGPAKKWEE LL+L V GS+PGI+GEEIAPLAK+NVATP
Sbjct:  460 SSTGGLVDTVREGVTGFHMGSFNVEFETVDPTDVAAVGSNVTRALKQYRTPVFHAMVQNCMAQDLSWKGPAKKWEEALLSLGVEGSQPGIEGEEIAPLAKQNVATP 565          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.899e-35
Identity = 71/106 (66.98%), Postives = 84/106 (79.25%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDTV++G+TGF +G F+V CE VDP DV A +  V RA+A YGT A+ EM+KN M QD SWKGPA+ WE+ LL+L VAGSE G +GEEIAPLAKENVATP
Sbjct:  505 ASTGGLVDTVKDGYTGFHIGRFNVKCEVVDPDDVIATAKAVTRAVAVYGTSAMQEMVKNCMDQDFSWKGPARLWEKVLLSLNVAGSEAGTEGEEIAPLAKENVATP 610          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.786e-35
Identity = 72/106 (67.92%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM+KN M QDLSWKGPAK WE  LL+L VAG EPGI+GEEIAPLAKENVA P
Sbjct:  503 ASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLKRAIKVVGTPAYEEMVKNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGIEGEEIAPLAKENVAAP 608          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_ORYSA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa GN=WAXY PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.102e-34
Identity = 72/106 (67.92%), Postives = 82/106 (77.36%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDTV EG TGF MG  SVDC+ V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL L VAGSEPG++GEEIAPLAKENVA P
Sbjct:  501 ASTGGLVDTVIEGKTGFHMGRLSVDCKVVEPSDVQKVATTLKRAIKIVGTPAYNEMVRNCMNQDLSWKGPAKNWENVLLGLGVAGSEPGVEGEEIAPLAKENVAAP 606          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.439e-34
Identity = 70/106 (66.04%), Postives = 85/106 (80.19%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            +S GGLVDTV+EG+TGF  G F V+CE VDP DV  ++ TV+RAL TYGTQA+ +++ N MAQ+ SWK PAK WE+ LLNLEV G+  GIDG+EIAPLAKENVATP
Sbjct:  498 SSTGGLVDTVKEGYTGFHAGPFDVECEDVDPDDVDKLAATVKRALKTYGTQAMKQIILNCMAQNFSWKKPAKLWEKALLNLEVTGNVAGIDGDEIAPLAKENVATP 603          
BLAST of EY756197 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.439e-34
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = 2
Query:    5 ASAGGLVDTVEEGFTGFQMGSFSVDCEAVDPVDVAAVSTTVRRALATYGTQALAEMMKNGMAQDLSWKGPAKKWEETLLNLEVAGSEPGIDGEEIAPLAKENVATP 322
            AS GGLVDT+ EG TGF MG  SVDC  V+P DV  V+TT++RA+   GT A  EM++N M QDLSWKGPAK WE  LL+L VAG EPG++GEEIAPLAKENVA P
Sbjct:  500 ASTGGLVDTIIEGKTGFHMGRLSVDCNVVEPADVKKVATTLQRAIKVVGTPAYEEMVRNCMIQDLSWKGPAKNWENVLLSLGVAGGEPGVEGEEIAPLAKENVAAP 605          
The following BLAST results are available for this feature:
BLAST of EY756197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_IPOBA2.533e-3973.58Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA2.533e-3972.64Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU6.240e-3869.81Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES5.283e-3769.81Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU9.963e-3669.81Granule-bound starch synthase 1b, chloroplastic/am... [more]
SSG1_ARATH2.899e-3566.98Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_SORBI3.786e-3567.92Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ORYSA1.102e-3467.92Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA1.439e-3466.04Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE1.439e-3466.04Granule-bound starch synthase 1, chloroplastic/amy... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-G06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756197 ID=EY756197; Name=EY756197; organism=Citrus sinensis; type=EST; length=614bp
CCACGCGTCCGCTGGTGGTTTGGTTGACACTGTGGAAGAAGGCTTTACAG
GATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGGATCCAGTA
GATGTGGCTGCAGTGTCCACAACCGTCAGAAGAGCTCTTGCAACCTATGG
TACTCAAGCTTTGGCTGAAATGATGAAAAATGGCATGGCTCAAGATCTTT
CATGGAAAGGACCAGCTAAGAAATGGGAGGAGACCCTACTTAACCTGGAA
GTTGCTGGTAGTGAACCTGGAATTGACGGCGAAGAAATTGCTCCTCTTGC
CAAGGAAAATGTGGCCACTCCTTGATCGAGGCTACAAAAATCTCCACTTT
TATTTTGGACCGCAAACATGTTCCTGTAATTCTCCACAACCCAAGATATT
ACTTAGGAAATAACATAGGTTGGCAGTATATGCAGCATGCGCTATTTTCA
ATAATGGTTTGGAGTTGAGACATTAGTGTTTACCTTGTATAATGAAATAT
TAAGTTCTGTTTTACAGTTTTGTAAAAGGGCTCTGAGGGCTGTCGCCACT
CTCCTGAAATGAAAAGTTCAACTGAACAAGTTTATAGAAAAAAAAAAAAA
AAAAAAAAAAAAAA
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