EY756178

Overview
NameEY756178
Unique NameEY756178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10323 contig Csv1_Contig10323:52..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756178 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 35/81 (43.21%), Postives = 43/81 (53.09%), Query Frame = 3
Query:  363 IDTLKLGACVDLLGGLVHIGLGDPVVNQCCPVLQGLVELEAAVXXXXXXXXXXXXXXXXXXXXXXXXV-TCGKTPPAGFTC 602
            ID LKLGACVD+LGGL+HIG+G      CCP+L GLV+L+AA+                        +  CGK PP  F C
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343          
The following BLAST results are available for this feature:
BLAST of EY756178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC3.292e-1143.2136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-E09-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756178 ID=EY756178|Name=EY756178|organism=Citrus sinensis|type=EST|length=890bp
CCACGCGTCCGAAAAAAATAACAATGGACTCCTCCAAACTCTCAGCTCTC
CTCATCATTTGCATGCTTTTCATCTCCACCGCCACTCCCATTCTTGGCTG
TGGCACGTGTGGCAAGCCGCACCCGAAGCACAGGAAACCTAGGCAGCCTA
GACCCATCGGTCTTCCTCCCATTGTCAAACCCCCAGTTCCCTTGCCACCA
GTCACTCTCCCTCCGGTGACCGTCCCGCCGATCAAGCCACCAGTCGACCT
CCCCACTCTCCCACCAGTTGCACTGCCTCCAGTTCTCCCTAATCCACCAA
GTGCTAGGAAGCCATGCCCATGTTCATACACACCACCTCCACCAGCGGCT
GCCACATGCCCCATTGACACCCTCAAATTGGGTGCTTGTGTGGACCTTCT
TGGTGGGTTGGTTCACATTGGTCTTGGTGACCCAGTTGTTAACCAATGCT
GCCCAGTTCTACAAGGACTTGTTGAGTTAGAAGCTGCTGTCTGCTTGTGC
ACTACTCTCAAGCTCAAGCTGCTTAATCTTAACATCTATCTTCCACTTGC
TCTTCAGCTTCTTGTCACTTGCGGAAAGACACCACCCGCTGGTTTCACTT
GCACTCTTTAGATCTAAGGTTGGTAGATTGATGATGGATACTGAAGGAAG
AAATCGACATGAAAGGATGTCGAGACTTATTTGTTTGTTTCTTTTTCTCT
CTCCCCCACTCTCTCTGTGTTTCTCTCATTGTTGGGATTGTAATGTTTGG
TCACATTTAATTGTACACCCATTTGTTTTTATATGATTTGTCGCATTGTA
TGTGTGTTTTCAATGTCCTTGACAAGGCAGCAATTATTTGATTTTCCTAC
CTCAAAAAAAAAAAAAAAAAAAAAANGGCGGCGCTCTAGA
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