EY756161

Overview
NameEY756161
Unique NameEY756161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756161_ssr477 microsatellite EY756161_ssr477:477..500. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6147 contig Csv1_Contig6147:391..1022. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY756161 vs. ExPASy Swiss-Prot
Match: DRM1_ARATH (DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.390e-58
Identity = 108/149 (72.48%), Postives = 130/149 (87.25%), Query Frame = 2 
Query:    8 SDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVK 454
            +DRYKSLGNSFQVDTVAYHLSVLK ++P+GINVLSLF+GIGG EVALHRL ++M  VVSV+IS+ NRNI+RS+WEQTNQKG L +F DVQ+LD N IE++++ +GGFDLVIGGSPCNNLAG NRH R GL G+ SSLF+DY RIL+ V+
Sbjct:  468 TDRYKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRNILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGSPCNNLAGGNRHHRVGLGGEHSSLFFDYCRILEAVR 616
[Close]
BLAST of EY756161 vs. ExPASy Swiss-Prot
Match: DRM2_ARATH (DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.575e-55
Identity = 104/153 (67.97%), Postives = 131/153 (85.62%), Query Frame = 2 
Query:    8 SDRYKSLGNSFQVDTVAYHLSVLKEMYPDGINVLSLFSGIGGAEVALHRLGVRMKNVVSVDISEVNRNIVRSWWEQTNQKGTLIDFADVQQLDANRIEQMINAFGGFDLVIGGSPCNNLAGSNRHSRDGLEGKESSLFYDYFRILDLVKNMMQ 466
            ++R+KSLGNSFQVDTVAYHLSVLK ++P GINVLSLF+GIGG EVALHRL ++MK VVSV+IS+VNRNI++ +WEQTNQ G LI+F+D+Q L  + IE ++  +GGFDLVIGGSPCNNLAG NR SR GLEG +SSLF++Y RIL++V+  M+
Sbjct:  472 TERFKSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISKVNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNRVSRVGLEGDQSSLFFEYCRILEVVRARMR 624
The following BLAST results are available for this feature:
BLAST of EY756161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRM1_ARATH3.390e-5872.48DNA (cytosine-5)-methyltransferase DRM1 OS=Arabido... [more]
DRM2_ARATH1.575e-5567.97DNA (cytosine-5)-methyltransferase DRM2 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-D02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756161 ID=EY756161; Name=EY756161; organism=Citrus sinensis; type=EST; length=632bp
CCACGCGTCCGATCGATATAAGTCCCTTGGGAACTCATTTCAGGTTGACA
CAGTGGCTTACCACCTGTCAGTCCTAAAAGAAATGTACCCTGATGGCATT
AATGTCCTTTCTCTTTTCTCTGGGATTGGTGGTGCAGAAGTTGCCTTACA
TCGGCTTGGCGTCCGGATGAAGAATGTTGTTTCCGTTGATATCTCTGAGG
TCAACAGGAACATTGTCCGGAGTTGGTGGGAGCAAACCAACCAGAAGGGG
ACTTTGATTGACTTTGCCGATGTTCAACAGCTTGATGCCAACCGAATAGA
GCAGATGATCAATGCATTTGGTGGATTTGATCTTGTTATCGGTGGGAGTC
CTTGTAACAATCTTGCTGGTAGCAATAGGCACAGCCGTGATGGACTCGAG
GGCAAAGAGTCCTCACTGTTCTATGATTACTTTCGTATTCTGGACTTGGT
GAAGAATATGATGCAGAGAAACTAGNATTATTATTATTATTATTATTATT
TTTGNATTTGTGAATAATTTGCGGATATTAGCTTAGCTGATTAACCGATC
CTTTATTATCCTTTGTTTACATTTTATTGGAAGAGGCATCAGAAAGTGAT
TCCATTTCCTAAAAAAAAAAAAAAAAAAAGGG
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