EY756153

Overview
NameEY756153
Unique NameEY756153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756153_ssr847 microsatellite EY756153_ssr847:847..858. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756153 vs. ExPASy Swiss-Prot
Match: MTPC4_ARATH (Metal tolerance protein C4 OS=Arabidopsis thaliana GN=MTPC4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.569e-53
Identity = 65/80 (81.25%), Postives = 73/80 (91.25%), Query Frame = 2
Query:  101 YGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALFFCGSFIIEGASLVVAL 340
            YGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNG+Q+LWT+  P NM+ AA+   GSF+IEGASL+VA+
Sbjct:  162 YGLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGVQNLWTSSPPPNMELAAVVIGGSFLIEGASLLVAI 241          

HSP 2 Score: 86.2705 bits (212), Expect = 1.569e-53
Identity = 42/66 (63.64%), Postives = 50/66 (75.76%), Query Frame = 1
Query:  343 AVGRGAAAEGLTXXDYIWRGLDPTSVAVMTEDGAAVSGLVFAGASLIAVPVXGIAFFDPXGSXISG 540
            +V +GAA EG+T  DYIWRG DPTSVAVMTEDGAAV+GL  A ASL+AV + G   +DP GS + G
Sbjct:  243 SVKKGAAQEGMTIRDYIWRGHDPTSVAVMTEDGAAVAGLAIAAASLVAVRMTGNPIYDPIGSIVVG 308          

HSP 3 Score: 28.4906 bits (62), Expect = 1.569e-53
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 1
Query:   43 MLAEVVHSVADFAN 84
            ++AEVVHSVADFAN
Sbjct:  143 IMAEVVHSVADFAN 156          
BLAST of EY756153 vs. ExPASy Swiss-Prot
Match: ZNT9_DANRE (Zinc transporter 9 OS=Danio rerio GN=slc30a9 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.939e-19
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 2
Query:  104 GLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALFFCGSFIIEGASLVVAL 340
            G+S S R PDA+HPYG+S  R++ SLIS VGIF +G+G +  +GI  L   +  E++ +A     GS + EGA+L+VA+
Sbjct:  291 GISQSVRNPDAIHPYGFSNMRYIASLISGVGIFMMGAGLSWYHGIMGLLHPQPIESLLWAYCILAGSLVSEGATLLVAI 369          

HSP 2 Score: 41.9726 bits (97), Expect = 3.939e-19
Identity = 19/61 (31.15%), Postives = 34/61 (55.74%), Query Frame = 1
Query:  346 VGRGAAAEGLTXXDYIWRGLDPTSVAVMTEDGAAVSGLVFAGASLIAVPVXGIAFFDPXGS 528
            + + A  +GL+  +Y+ +  DP++  V+ ED AAV G+V A   +    + G  ++D  GS
Sbjct:  372 IKKSARTQGLSFYEYVMQSRDPSTNVVLLEDAAAVLGVVLAAGCMGLTSLTGNPYYDSLGS 432          
BLAST of EY756153 vs. ExPASy Swiss-Prot
Match: ZNT9_XENLA (Zinc transporter 9 OS=Xenopus laevis GN=slc30a9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.556e-17
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  104 GLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALFFCGSFIIEGASLVVAL 340
            G+S S R PD  HPYG++  R++ SLIS VGIF +G+G +  +GI  L   +  E++ +A     GS + EGA+L+VA+
Sbjct:  277 GISQSARTPDPGHPYGFTNMRYIASLISGVGIFMMGAGLSWYHGIIGLLHPQPIESLLWAYCILAGSLVSEGATLLVAI 355          

HSP 2 Score: 41.5874 bits (96), Expect = 1.556e-17
Identity = 20/61 (32.79%), Postives = 34/61 (55.74%), Query Frame = 1
Query:  346 VGRGAAAEGLTXXDYIWRGLDPTSVAVMTEDGAAVSGLVFAGASLIAVPVXGIAFFDPXGS 528
            + + + A+GL+   Y+ +  DP++  V+ ED AAV GLV A + +    + G   +D  GS
Sbjct:  358 IRKSSRAKGLSFYQYVMQSRDPSTNVVLMEDAAAVLGLVMAASCMGLTSLTGNPLYDSLGS 418          
BLAST of EY756153 vs. ExPASy Swiss-Prot
Match: ZNT9_MOUSE (Zinc transporter 9 OS=Mus musculus GN=Slc30a9 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.022e-17
Identity = 34/79 (43.04%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  104 GLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALFFCGSFIIEGASLVVAL 340
            G+S S + PD  HPYG+S  R++ SLIS VGIF +G+G +  +GI  L   +  E++ +A     GS + EGA+L+VA+
Sbjct:  285 GISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGIMGLLHPQPMESLLWAYCILAGSLVSEGATLLVAI 363          

HSP 2 Score: 40.0466 bits (92), Expect = 2.022e-17
Identity = 19/59 (32.20%), Postives = 30/59 (50.85%), Query Frame = 1
Query:  352 RGAAAEGLTXXDYIWRGLDPTSVAVMTEDGAAVSGLVFAGASLIAVPVXGIAFFDPXGS 528
            R A A+G T   Y+    DP++  ++ ED AAV G++ A   +    + G   +D  GS
Sbjct:  368 RSAQAKGTTFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGS 426          
BLAST of EY756153 vs. ExPASy Swiss-Prot
Match: ZNT9_PONAB (Zinc transporter 9 OS=Pongo abelii GN=SLC30A9 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.774e-17
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  104 GLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALFFCGSFIIEGASLVVAL 340
            G+S S + PD  HPYG+S  R++ SLIS VGIF +G+G +  +G+  L   +  E++ +A     GS + EGA+L+VA+
Sbjct:  287 GISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATLLVAV 365          

HSP 2 Score: 39.6614 bits (91), Expect = 5.774e-17
Identity = 18/59 (30.51%), Postives = 31/59 (52.54%), Query Frame = 1
Query:  352 RGAAAEGLTXXDYIWRGLDPTSVAVMTEDGAAVSGLVFAGASLIAVPVXGIAFFDPXGS 528
            R A A+G++   Y+    DP++  ++ ED AAV G++ A   +    + G   +D  GS
Sbjct:  370 RNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGS 428          
BLAST of EY756153 vs. ExPASy Swiss-Prot
Match: ZNT9_HUMAN (Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.774e-17
Identity = 33/79 (41.77%), Postives = 51/79 (64.56%), Query Frame = 2
Query:  104 GLSSSRRAPDALHPYGYSKERFVWSLISAVGIFCLGSGATIVNGIQHLWTAEAPENMKYAALFFCGSFIIEGASLVVAL 340
            G+S S + PD  HPYG+S  R++ SLIS VGIF +G+G +  +G+  L   +  E++ +A     GS + EGA+L+VA+
Sbjct:  286 GISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATLLVAV 364          

HSP 2 Score: 39.6614 bits (91), Expect = 5.774e-17
Identity = 18/59 (30.51%), Postives = 31/59 (52.54%), Query Frame = 1
Query:  352 RGAAAEGLTXXDYIWRGLDPTSVAVMTEDGAAVSGLVFAGASLIAVPVXGIAFFDPXGS 528
            R A A+G++   Y+    DP++  ++ ED AAV G++ A   +    + G   +D  GS
Sbjct:  369 RNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNPLYDSLGS 427          
The following BLAST results are available for this feature:
BLAST of EY756153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MTPC4_ARATH1.569e-5381.25Metal tolerance protein C4 OS=Arabidopsis thaliana... [more]
ZNT9_DANRE3.939e-1945.57Zinc transporter 9 OS=Danio rerio GN=slc30a9 PE=2 ... [more]
ZNT9_XENLA1.556e-1743.04Zinc transporter 9 OS=Xenopus laevis GN=slc30a9 PE... [more]
ZNT9_MOUSE2.022e-1743.04Zinc transporter 9 OS=Mus musculus GN=Slc30a9 PE=1... [more]
ZNT9_PONAB5.774e-1741.77Zinc transporter 9 OS=Pongo abelii GN=SLC30A9 PE=2... [more]
ZNT9_HUMAN5.774e-1741.77Zinc transporter 9 OS=Homo sapiens GN=SLC30A9 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-C06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756153 ID=EY756153; Name=EY756153; organism=Citrus sinensis; type=EST; length=935bp
TGCGTCACGCGCGCGTCCGGGCTAGGGCTTTCTTGACGTGGTATGCTGGC
TGAAGTTGTGCATTCGGTTGCGGACTTTGCTAATTAGGTCTTTAATAAAT
TATGGTCTGAGTAGCTCCAGGCGTGCACCTGATGCTCTTCATCCTTATGG
CTATTCCAAGGAACGATTTGTTTGGTCTTTGATATCAGCTGTCGGGATCT
TTTGTCTTGGTTCTGGTGCTACAATTGTCAATGGAATTCAACACTTGTGG
ACTGCAGAGGCTCCTGAAAATATGAAATATGCAGCTTTGTTTTTTTGTGG
TTCATTTATCATTGAAGGTGCTTCTCTTGTTGTTGCGCTCCCGCTGTGGG
GAGAGGAGCAGCTGCAGAAGGTTTGACNNTANGAGACTATATCTGGCGTG
GTCTTGACCCTACATCTGTTGCTGTTATGACNGAGGATGGTGCTGCNGTT
TCCGGCCTTGTTTTTGCTGGTGCNTCCTTGATTGCCGTTCCTGTCNCNGG
AATTGCNTTTTTTGACCCNNTTGGGTCNNTTATCAGTGGGAAGCCTTCTT
GGGATGGTGGCTTTNTTTCTGGTCCNNNGGGCTCGTCGTGCTTTTGTTTG
GTGGGGCTTTGGGTGGCCTTGGTTTGGGGAAGATTCTCCTTTTCTTGGCN
GCTGCTCCGGTGGTNCTTGCTCTTTCTGTTTGCTCCTCGGTCGGGGTTGG
TCCCGGGCTTTCTTTGGTTCCCGGGCGGGTGTGTTTTTCGGCGGGGGGTG
GGCTTCTCCTCGTCTCCTTCTCGGGGCCGGGGTGGTGTCCTGGGTCCGCT
GCGGTGCCCGGGCCGGCNGGCGCGGGGTCCGCGCGCTCTGGCCGCGCTCT
CTCTCTCTTCTGTCGCGGCGCTCCTCCGCCTCTCCCTCTGTTGTCGGGGG
GCGTTTTACCTAGCCAAATAAAAAAACAAAAAAAA
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