EY756144

Overview
NameEY756144
Unique NameEY756144
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7671 contig Csv1_Contig7671:110..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.844e-16
Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 2
Query:   17 SRAHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            S  H PY+EM++EAIT+LKERTGSS +AIAKF+E+K KA LP NF            A GKL KVKNS+KL
Sbjct:   47 SPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117          
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 2
Query:   26 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            HPPY EMI +AI  LKERTGSSQ AI KFIEEKQK SLP+NF            A+ KLVKVKNS+KL
Sbjct:   56 HPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    8 SEKSRAHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            S+ + +HP + EMI++AI+ LKERTGSSQ+AI KF+E+K K  LP+NF            A+GKLVKVKNSFKL
Sbjct:   45 SKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 41/69 (59.42%), Postives = 48/69 (69.57%), Query Frame = 2
Query:   23 AHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            +HP Y EMI +AI +LKE+ GSSQ+AIAKFIEEKQK  LP NF            A+GKL+KVK SFKL
Sbjct:   61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKL 128          
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 40/69 (57.97%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   23 AHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            AHP Y+EM++EAI ALKER+GSS  AI KFIE+K KA LP NF            A GKL KVK S+KL
Sbjct:   54 AHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 122          
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 41/69 (59.42%), Postives = 46/69 (66.67%), Query Frame = 2
Query:   23 AHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            +HP Y EMI +AI  LKERTGSSQ+AI KFIEEK+K  LP  F            A+GKLVKVK SFKL
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 2
Query:    8 SEKSRAHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            S K+  HPPY +MI EA+ AL E+ GSS +A+AK++E+K K  LP NF            A GKL+K+K S+KL
Sbjct:   43 SAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKL 116          
BLAST of EY756144 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.591e-12
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 2
Query:   23 AHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 229
            +HP Y EMI +AI  LKERTGSSQ+AI KFIEEK K SLP  F            A+ KLVKVK SFK+
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
The following BLAST results are available for this feature:
BLAST of EY756144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
H1_MAIZE6.844e-1659.15Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_SOLLC9.883e-1564.71Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES4.905e-1455.41Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_PEA6.406e-1459.42Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_WHEAT8.366e-1457.97Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H11_ARATH7.082e-1359.42Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H1_SOLPN2.691e-1247.30Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H12_ARATH4.591e-1257.97Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-B06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756144 ID=EY756144; Name=EY756144; organism=Citrus sinensis; type=EST; length=710bp
CCACGCGTCCGAGAAATCGAGGGCCCACCCTCCTTACTCTGAGATGATAA
ACGAAGCGATAACTGCGTTGAAGGAGAGGACCGGCTCGAGTCAATTTGCG
ATCGCGAAGTTTATCGAGGAGAAACAGAAGGCTAGTCTCCCTAACAATTT
CAAGAAACTGTTGCTCGTTCAATTGAAGAAGCTTGTTGCCAACGGCAAGC
TGGTCAAAGTCAAGAACTCCTTCAAGCTCCCTCCTAAATCGTCCTCTTCT
ACCGCCGCCGCTGCCGCCAAGAAGCCGAAACCTTCCTCTACCGGCGCCAC
TGCCGCCAAGAAGCCGAAACCTTCCTCTACCGCTGCCGCCGCCGCGAAGA
AGCCTAAAGCTAGCTCCACTGATGCTGCGGCTAAGCAGACGAAGTCCAAG
CCAAAAGCAAAAGAAGCGGCAGTGAAGTCGATCAAGTCTCCGGCGAAGAA
GGCGGTGGTTGCAGCCAAAGTGAAGAAGCTGAAGAGCATAAGGTCGCCGG
TTAAGAAGGCTTCGGCCAAGAAGGGAAAGAAATGAATCGAATGCATGGCT
CTGTTTGATTTAGGGTTTAGAGTTTGTAAATTTGGGGATAATTCTAGGTT
TGTCTTTGATTTGGATTTGTGATTCTGTTTTGACAGGTGTGGACAGANCA
TTTTAGTTTAATCAAAAAGTCTGATTCTGATCAAAAGAAAAAAAAAAAAA
AAAAAAAAAA
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