EY756142

Overview
NameEY756142
Unique NameEY756142
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756142_ssr304 microsatellite EY756142_ssr304:304..323. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_DICDI (Transmembrane protein 49 homolog OS=Dictyostelium discoideum GN=tmem49 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.801e-15
Identity = 46/130 (35.38%), Postives = 73/130 (56.15%), Query Frame = 3
Query:  363 SSSQDMAMSISDLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKA 752
            S+ +D+ + I  L E+ ++  +N+ L   P KT K F+  +   L   + Y   +  +L+    + A+L  + V + G H+K++ + S+     +WWV LGV   IGL +G HTFVLYLGPHIA  T+ A
Sbjct:   10 SNEKDIQLRIQQLEERKEKR-KNVKLLFSPIKTTKYFLYILKDTLVSGIRYFQTRP-FLLFFIALFASLTFIAVYVPGEHQKYMGKYSDLISDCIWWVGLGVLSSIGLGTGLHTFVLYLGPHIAKVTLAA 137          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_DANRE (Transmembrane protein 49 OS=Danio rerio GN=tmem49 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.525e-14
Identity = 49/136 (36.03%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  372 QDMAMSISDLREKHQQELE---NLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            Q+ + + S LRE+ Q + E   +L L  +PF T++ F L     LK     L  + G + L+  V+ +L  L  +I+G H+++++ L + F +  +WV LG+   +GL +G HTF+LYLGPHIA  T+ A   G V
Sbjct:   21 QNGSSTDSSLRERKQLDREERLSLVLWKRPFITLQYFFLETAITLKEWTWKLWQRRGVVFLT-VVLFSLFSLAYSIEGAHQEYVQHLEKKFLWCAYWVGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECGSV 155          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_PONAB (Transmembrane protein 49 OS=Pongo abelii GN=TMEM49 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.883e-14
Identity = 38/128 (29.69%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  387 SISDLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            S+++ + + ++E +N+ L  QP  T++ F L ++  LK     L  +   +++S  ++ A+ I    ++G H+++++ + + F    +W+ LG+   +GL +G HTF+LYLGPHIA  T+ A     V
Sbjct:   29 SVNEKKRREREERQNIVLWRQPLITLQYFSLEILVILKEWTSKLWHRQS-IVVSFLLLLAVLIATYYVEGAHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSV 155          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_HUMAN (Transmembrane protein 49 OS=Homo sapiens GN=TMEM49 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.291e-13
Identity = 38/128 (29.69%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  387 SISDLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            S+++ + + ++E +N+ L  QP  T++ F L ++  LK     L  +   +++S  ++ A+ I    ++G H+++++ + + F    +W+ LG+   +GL +G HTF+LYLGPHIA  T+ A     V
Sbjct:   29 SVNEKKRREREERQNIVLWRQPLITLQYFSLEILVILKEWTSKLWHRQS-IVVSFLLLLAVLIATYYVEGVHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSV 155          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_RAT (Transmembrane protein 49 OS=Rattus norvegicus GN=Tmem49 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.875e-13
Identity = 38/128 (29.69%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  387 SISDLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            S+++ + + ++E +N+ L  QP  T++ F L  +  LK     L  +   ++    ++AAL +    ++G H+++++ + + F    +W+ LG+   +GL +G HTF+LYLGPHIA  T+ A     V
Sbjct:   29 SVNEKKRRDREERQNIVLWRQPLITLQYFSLETLVVLKEWTSKLWHRQSMVVSFFLLLAAL-VATYYVEGAHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSV 155          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_XENTR (Transmembrane protein 49 OS=Xenopus tropicalis GN=tmem49 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.406e-13
Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = 3
Query:  339 MGSGKGATSSSQDMAMSISDLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVT--IDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            +G  K   + S      +SD + + ++E +++ L  +P  T++ FIL V+  LK   + L  +    M+  +V+  L +L V   I+G H+++++ + +   +  +WV LG+   +GL +G HTF+LYLGPHIA  TI A     V
Sbjct:   13 VGMAKEQNNGSFQDPSFLSDRKSRDREERQSIVLWRKPLITLQYFILEVLITLKDWSIRLWHRR---MMVVSVLLLLAVLSVVYYIEGTHQQYVQYVEKKCLWCAYWVGLGILSSVGLGTGLHTFLLYLGPHIASVTIAAYECNSV 155          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_MOUSE (Transmembrane protein 49 OS=Mus musculus GN=Tmem49 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.406e-13
Identity = 38/128 (29.69%), Postives = 71/128 (55.47%), Query Frame = 3
Query:  387 SISDLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            S+ + + + ++E +N+ L  QP  T++ F L  +  LK     L  +   ++    ++AAL +    ++G H+++++ + + F    +W+ LG+   +GL +G HTF+LYLGPHIA  T+ A     V
Sbjct:   29 SVHEKKRRDREERQNIVLWRQPLITLQYFSLETLVVLKEWTSKLWHRQSIVVSFLLLLAAL-VATYYVEGAHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSV 155          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_BOVIN (Transmembrane protein 49 OS=Bos taurus GN=TMEM49 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.093e-12
Identity = 37/128 (28.91%), Postives = 72/128 (56.25%), Query Frame = 3
Query:  387 SISDLREKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVTIDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            S+++ + + ++E +N+ L  QP  T++ F L  +  LK     L  +   +++S  ++ A+      ++G H+++++ + + F    +W+ LG+   +GL +G HTF+LYLGPHIA  T+ A     V
Sbjct:   29 SVNEKKRRDREERQNIVLWRQPLITLQYFSLETLVILKEWTSKLWHRQS-IVVSFLLLLAVLTATYYVEGAHQQYVQRIEKQFLLYAYWIGLGILSSVGLGTGLHTFLLYLGPHIASVTLAAYECNSV 155          
BLAST of EY756142 vs. ExPASy Swiss-Prot
Match: TMM49_XENLA (Transmembrane protein 49 OS=Xenopus laevis GN=tmem49 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.591e-11
Identity = 41/125 (32.80%), Postives = 71/125 (56.80%), Query Frame = 3
Query:  402 REKHQQELENLTLTTQPFKTIKLFILGVIQYLKRSVLYLLAKGGWLMLSCTVVAALGILLVT--IDGPHEKHLEELSEYFRFGLWWVALGVALFIGLWSGXHTFVLYLGPHIALXTIKAXHVGRV 770
            + + ++E +++ L  +P  T++ FIL V+  LK   + L  +    M+  +V+  L +L V   I+G H++ ++ + +   +  +WV LG+   +GL +G HTF+LYLGPHIA  TI A     V
Sbjct:   34 KRRDREERQSIVLWRKPLITLQYFILEVLINLKEWSVRLWHRR---MMVVSVLLLLAVLSVAYYIEGEHQQCVQYIEKKCLWCAYWVGLGILSSVGLGTGLHTFLLYLGPHIASVTIAAYECNSV 155          
The following BLAST results are available for this feature:
BLAST of EY756142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TMM49_DICDI1.801e-1535.38Transmembrane protein 49 homolog OS=Dictyostelium ... [more]
TMM49_DANRE1.525e-1436.03Transmembrane protein 49 OS=Danio rerio GN=tmem49 ... [more]
TMM49_PONAB9.883e-1429.69Transmembrane protein 49 OS=Pongo abelii GN=TMEM49... [more]
TMM49_HUMAN1.291e-1329.69Transmembrane protein 49 OS=Homo sapiens GN=TMEM49... [more]
TMM49_RAT2.875e-1329.69Transmembrane protein 49 OS=Rattus norvegicus GN=T... [more]
TMM49_XENTR6.406e-1331.51Transmembrane protein 49 OS=Xenopus tropicalis GN=... [more]
TMM49_MOUSE6.406e-1329.69Transmembrane protein 49 OS=Mus musculus GN=Tmem49... [more]
TMM49_BOVIN1.093e-1228.91Transmembrane protein 49 OS=Bos taurus GN=TMEM49 P... [more]
TMM49_XENLA4.591e-1132.80Transmembrane protein 49 OS=Xenopus laevis GN=tmem... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-B03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756142 ID=EY756142; Name=EY756142; organism=Citrus sinensis; type=EST; length=932bp
CCACGCGTCCGTGTTGCTTCTGGTTGCGAGGGAGGACTCTCCATCTATAA
CTCTTATCTTGCAGAGAAAATTAAAAACTAAAAAAGAAGAAGAAAGCTTT
CCATTAGGAGATCTTCTTCTCGCAAGCTGAGTAATCACTTTTCTTCTGTC
TTTCTTAGATCTGCGAAATTTTTGCTCCCTAATTCAAATAATTTTTGGTT
CAAATTCCAGCAATTAATTAATCAATTCATATTTGACAGCTTTTATAAAA
CAGAAATAAAAATAGTAAAATTTTTTGATTCTTTTAAGGATAAACACAGA
GAAAGAGAGAGAGAGAGAGAGAGTATGAGTTTTGTGTGATGGGGTCTGGT
AAAGGAGCGACGTCGTCTTCCCAAGATATGGCCATGTCGATCTCAGACCT
CCGTGAGAAGCATCAACAGGAATTAGAAAACCTTACACTAACCACACAAC
CTTTTAAGACAATAAAGCTTTTCATTTTGGGAGTTATTCAATATCTTAAG
CGATCGGTGCTGTATCTTTTGGCCAAAGGAGGATGGCTTATGCTTTCTTG
TACTGTGGTGGCGGCACTTGGAATTTTGCTTGTAACTATTGATGGCCCTC
ATGAAAAGCATTTAGAGGAACTTTCAGAATATTTCCGGTTTGGGTTGTGG
TGGGTAGCCCTTGGTGTTGCCCTCTTCATTGGTCTTTGGTCTGGTTNGCA
CACTTTTGTCCTTTATCTGGGCCCTCACATTGCGCTGNTCACAATAAAGG
CATGNCATGTGGGCCGAGTGTTTGAAAAGTGCTCATATGATACATACAGC
TGAAAAGAGGTCATCATGGCTTGATAAGGATGTGATGAATTGGGACCTCC
ATATTCTATCATNCGAAAGGTCACGGGTCCCCTAACAGCATATGCCGCAG
GTCAGCTGGAACTATTCGGGGGGGTTGGTACG
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