EY756133

Overview
NameEY756133
Unique NameEY756133
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756133_ssr601 microsatellite EY756133_ssr601:601..610. BLAST: Citrus ESTs to Prunus persica proteins V1
EY756133_ssr313 microsatellite EY756133_ssr313:313..324. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1382 contig Csv1_Contig1382:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_EUPES (Histone H2A OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37
Identity = 81/109 (74.31%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:  136 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            VSRSVKAGLQFPVGRIGRFLKKGRY+QRVGSGAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKK +++
Sbjct:   24 VSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKAEKA 132
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSJ (Probable histone H2A.5 OS=Oryza sativa subsp. japonica GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37
Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            ++VSRSVKAGLQFPVGRIGR+LKKGRY+QR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A5_ORYSI (Probable histone H2A.5 OS=Oryza sativa subsp. indica GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.533e-37
Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            ++VSRSVKAGLQFPVGRIGR+LKKGRY+QR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   27 KAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 136
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSJ (Probable histone H2A.6 OS=Oryza sativa subsp. japonica GN=Os05g0113900 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.002e-37
Identity = 80/108 (74.07%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:  136 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            VSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A6_ORYSI (Probable histone H2A.6 OS=Oryza sativa subsp. indica GN=OsI_017523 PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.002e-37
Identity = 80/108 (74.07%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:  136 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            VSRSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   26 VSRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTAE 133
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.002e-37
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKES 462
            +SV+RS++AGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIA GGVLPNINPVLLPKKT+ S
Sbjct:   22 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERS 132
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.615e-37
Identity = 79/108 (73.15%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 453
            +SV++S+KAGLQFPVGRIGR+LKKGRY+QRVGSGAP                  GNAARDNKK +IIPRHV LAVRNDEELGKLL GVTIASGGVLPNINPVLLPKK+
Sbjct:   20 KSVTKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.826e-37
Identity = 80/110 (72.73%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            +SVSRSVKAGLQFPVGRIGR+LKKGRY+Q VG+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT E
Sbjct:   27 KSVSRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAE 136
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 7.609e-37
Identity = 79/110 (71.82%), Postives = 86/110 (78.18%), Query Frame = 1 
Query:  130 QSVSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKTKE 459
            +SV+RSVKAGLQFPVGRIGR+LKKGRY+QRVG+GAP                  GNAARDNKK +IIPRH+ LAVRNDEELGKLL GVT A GGVLPNINPVLLPKKT E
Sbjct:   21 KSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKTAE 130
[Close]
BLAST of EY756133 vs. ExPASy Swiss-Prot
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica GN=Os05g0461400 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.937e-37
Identity = 78/106 (73.58%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:  136 VSRSVKAGLQFPVGRIGRFLKKGRYSQRVGSGAPXXXXXXXXXXXXXXXXXXGNAARDNKKKKIIPRHVQLAVRNDEELGKLLTGVTIASGGVLPNINPVLLPKKT 453
            VSRSVKAGLQFPVGRIGR+LK+GRYSQR+G+GAP                  GNAARDNKK +IIPRHV LA+RNDEELGKLL GVTIA GGVLPNINPVLLPKKT
Sbjct:   27 VSRSVKAGLQFPVGRIGRYLKQGRYSQRIGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKT 132
The following BLAST results are available for this feature:
BLAST of EY756133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_EUPES1.533e-3774.31Histone H2A OS=Euphorbia esula PE=2 SV=1[more]
H2A5_ORYSJ1.533e-3771.82Probable histone H2A.5 OS=Oryza sativa subsp. japo... [more]
H2A5_ORYSI1.533e-3771.82Probable histone H2A.5 OS=Oryza sativa subsp. indi... [more]
H2A6_ORYSJ2.002e-3774.07Probable histone H2A.6 OS=Oryza sativa subsp. japo... [more]
H2A6_ORYSI2.002e-3774.07Probable histone H2A.6 OS=Oryza sativa subsp. indi... [more]
H2A2_MEDTR2.002e-3771.17Probable histone H2A.2 OS=Medicago truncatula GN=M... [more]
H2A1_SOLLC2.615e-3773.15Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A_MAIZE5.826e-3772.73Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A_PETCR7.609e-3771.82Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A4_ORYSJ9.937e-3773.58Probable histone H2A.4 OS=Oryza sativa subsp. japo... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-005-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756133 ID=EY756133; Name=EY756133; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGCCACGAAACCTGTCACTTTGTTGAAGTAAATCTTTCTGC
ATTTTGAGGTTGGGTCATGGATACACCAGTCAAAGTGAAGAAGGGAGCCG
GCGGAAGGAAGGGAGGAGGACCGAAAAAGCAATCCGTTTCCAGGTCTGTG
AAAGCGGGGCTCCAATTCCCAGTAGGTAGAATCGGGCGTTTCTTGAAGAA
GGGAAGATATTCGCAGCGTGTGGGTAGCGGTGCTCCAGTTTACATGGCCG
CTGTGCTCGAGTACCTAGCTGCTGAAGTGTTGGAGTTGGCTGGGAACGCG
GCACGTGACAACAAGAAGAAGAAGATCATCCCAAGGCACGTGCAATTAGC
GGTGAGGAATGATGAGGAGTTGGGGAAATTACTCACAGGTGTGACGATTG
CAAGCGGCGGCGTTTTGCCTAATATCAACCCAGTGCTGTTGCCAAAGAAG
ACTAAGGAAAGTGTTGCGAAGGAGCCCAAATCTCCATCCAAGGCTACCAA
GTCCCCAAAGAAAGCCTAGATTAGTTGTATCTTGAGTGCTACCGCATGTA
ATGTTCAGTCTAGGTTTTCCCATTTTGCTCTTTTTTCTTTTGATATATGC
TGTGTGTGTGTTGTTAGCATAGCCTCGGCCTGTTAAATGAATCGAAACAA
GTTGTTTTTTGTAACTATAAACCCCTTTCATATGGGGATTTAATTATAGT
TTATAAATCTTCTACAAAAAAAAAAAAAAAAAAAAGGGCGGCCGCCCTTT
TTTTTTTTTTTTTTTTTTTTGGATAATCTCATCCAGTACACATAGTTAAA
GATTAGCAAATGCAATCTCTGGTTACATAAAAAAAAAACTCATAACCATT
TTTCTTTTTGGCCTTTTTACCGATAC
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