EY756123

Overview
NameEY756123
Unique NameEY756123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length375
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756123_ssr67 microsatellite EY756123_ssr67:67..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DCAF8_RAT (DDB1- and CUL4-associated factor 8 OS=Rattus norvegicus GN=Dcaf8 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH 288
            Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPH
Sbjct:  422 YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPH 481          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DCAF8_PONAB (DDB1- and CUL4-associated factor 8 OS=Pongo abelii GN=DCAF8 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH 288
            Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPH
Sbjct:  428 YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPH 487          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DCAF8_MOUSE (DDB1- and CUL4-associated factor 8 OS=Mus musculus GN=Dcaf8 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH 288
            Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPH
Sbjct:  422 YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPH 481          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DCAF8_HUMAN (DDB1- and CUL4-associated factor 8 OS=Homo sapiens GN=DCAF8 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH 288
            Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++++ M GD+  VVN LEPH
Sbjct:  428 YKGHRNNATVKGVNFYGPKSEFVVSGSDCGHIFLWEKSSCQIIQFMEGDKGGVVNCLEPH 487          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DC8L1_XENTR (DDB1- and CUL4-associated factor 8-like protein 1 OS=Xenopus tropicalis GN=dcaf8l1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH 288
            Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++V+ M GD+  VVN LEPH
Sbjct:  434 YKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMDGDKGGVVNCLEPH 493          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DC8L1_XENLA (DDB1- and CUL4-associated factor 8-like protein 1 OS=Xenopus laevis GN=dcaf8l1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.211e-16
Identity = 37/60 (61.67%), Postives = 48/60 (80.00%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH 288
            Y GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F+W+K   ++V+ M GD+  VVN LEPH
Sbjct:  431 YKGHRNNATVKGVNFYGPRSEFVVSGSDCGHIFLWEKSSCQIVQFMDGDKGGVVNCLEPH 490          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DC8L1_HUMAN (DDB1- and CUL4-associated factor 8-like protein 1 OS=Homo sapiens GN=DCAF8L1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDR-HVVNQLEPH 288
            Y GHRN+ T+K VNF+GP  E+V+SGSDCGH+F W+K   ++++ M GDR  +VN LEPH
Sbjct:  431 YKGHRNNDTIKCVNFYGPRSEFVVSGSDCGHVFFWEKSSSQIIQFMEGDRGDIVNCLEPH 490          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DC8L2_HUMAN (DDB1- and CUL4-associated factor 8-like protein 2 OS=Homo sapiens GN=DCAF8L2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  112 YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRH-VVNQLEPH 288
            + GHRN+ TVKGVNF+GP  E+V+SGSDCGH+F W+K   ++++ + G R   +N LEPH
Sbjct:  434 FKGHRNNTTVKGVNFYGPRSEFVVSGSDCGHIFFWEKSSCQIIQFLKGSREGTINCLEPH 493          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: YBU3_SCHPO (Uncharacterized WD repeat-containing protein C609.03 OS=Schizosaccharomyces pombe GN=SPBC609.03 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.124e-13
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   52 GPSPLSLSPEDLQKREEPQV--------YSGHRNSQTVKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 288
            GP+ LSL  +  +K  EP V        Y GH N +++K VNF+G NDEYVMSGSD G  FIW K    ++ ++ GD   VN +E H
Sbjct:  637 GPTLLSLRMKK-RKAVEPNVPVNTHVKSYYGHCNVESIKNVNFYGQNDEYVMSGSDDGRFFIWDKLNASILAIIHGDSEAVNVIEGH 722          
BLAST of EY756123 vs. ExPASy Swiss-Prot
Match: DCAF6_PONAB (DDB1- and CUL4-associated factor 6 OS=Pongo abelii GN=DCAF6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 34/61 (55.74%), Postives = 44/61 (72.13%), Query Frame = 1
Query:  109 VYSGHRNSQT-VKGVNFFGPNDEYVMSGSDCGHLFIWKKKGGKLVRLMVGDRHVVNQLEPH 288
            VY GHRNS+T +K  NF+G N  +VMSGSDCGH+FIW +   + + L+  D HVVN L+PH
Sbjct:  712 VYKGHRNSRTMIKEANFWGAN--FVMSGSDCGHIFIWDRHTAEHLMLLEADNHVVNCLQPH 770          
The following BLAST results are available for this feature:
BLAST of EY756123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCAF8_RAT1.211e-1660.00DDB1- and CUL4-associated factor 8 OS=Rattus norve... [more]
DCAF8_PONAB1.211e-1660.00DDB1- and CUL4-associated factor 8 OS=Pongo abelii... [more]
DCAF8_MOUSE1.211e-1660.00DDB1- and CUL4-associated factor 8 OS=Mus musculus... [more]
DCAF8_HUMAN1.211e-1660.00DDB1- and CUL4-associated factor 8 OS=Homo sapiens... [more]
DC8L1_XENTR1.211e-1661.67DDB1- and CUL4-associated factor 8-like protein 1 ... [more]
DC8L1_XENLA1.211e-1661.67DDB1- and CUL4-associated factor 8-like protein 1 ... [more]
DC8L1_HUMAN6.011e-1656.67DDB1- and CUL4-associated factor 8-like protein 1 ... [more]
DC8L2_HUMAN6.646e-1553.33DDB1- and CUL4-associated factor 8-like protein 2 ... [more]
YBU3_SCHPO8.124e-1344.83Uncharacterized WD repeat-containing protein C609.... [more]
DCAF6_PONAB1.061e-1255.74DDB1- and CUL4-associated factor 6 OS=Pongo abelii... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-H06-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756123 ID=EY756123; Name=EY756123; organism=Citrus sinensis; type=EST; length=375bp
CCACGCGTCCGCGATGAGCTCGCATATCTGTTTGAGAAGAATATGGGATT
GGGGCCTTCACCCTTGTCTCTCTCTCCTGAGGATTTGCAGAAACGTGAGG
AGCCACAGGTTTATTCTGGTCATAGGAATTCACAAACAGTTAAAGGAGTG
AACTTCTTTGGCCCCAATGATGAATATGTTATGAGTGGCTCTGACTGTGG
TCACCTATTCATTTGGAAAAAGAAGGGAGGTAAGCTTGTGCGTTTAATGG
TTGGTGATCGACATGTAGTAAATCAGCTAGAGCCCCATGTGATTANTCTA
NNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAG
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