EY756083

Overview
NameEY756083
Unique NameEY756083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY756083 vs. ExPASy Swiss-Prot
Match: NCBP1_ARATH (Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.538e-42
Identity = 92/172 (53.49%), Postives = 120/172 (69.77%), Query Frame = 1
Query:   37 PARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKSTHADAMAVDLEEPSAMELDNENGRPKKSQXXXXXXXXVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLS-EDTHPLFRRAVYSGLHRPIN 549
            PA++ RLK   EK    E+S +ESLEAKEAL  RA+ E E L L L+++F  VL ERLPD ++  ++QDLKS  A+      ++PSAM++D+ENG PKKS            +GE+EQWCLSTLGY+ AF+RQYASEIWPHMEKL++EV S ED HPLF +A+ S L  P++
Sbjct:  692 PAKMKRLKSTVEKTGEAELSLRESLEAKEALLNRALSETEVLLLLLFQSFLGVLKERLPDPTKVRSVQDLKSIGAED-----DKPSAMDVDSENGNPKKS----------CEVGEREQWCLSTLGYLTAFTRQYASEIWPHMEKLESEVFSGEDVHPLFLQAISSALQFPLH 848          
BLAST of EY756083 vs. ExPASy Swiss-Prot
Match: NCBP1_ORYSJ (Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica GN=ABH1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.686e-38
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 1
Query:   37 PARLSRLKLHAEKAKNEEISAKESLEAKEALFARAVEENEALYLSLYRNFSNVLMERLPDASRAGTLQDLKS--THADAMAVDLEEPSAMELDNENGRPKKSQXXXXXXXXVYNIGEKEQWCLSTLGYVKAFSRQYASEIWPHMEKLDAEVLSEDTHPLFRRAVYSGLHRP 543
            P RL RL+  A+KAK  E++ +ESLEAKEAL AR +EE++ L   L+++F  VL ERLP  S  G + +L++   + ++ A D  E + ME+DNENG    SQ         +N+GE EQWCL TLGY+K+FSRQYA+EIW H+  LD E+   + HPL R+A +SGL RP
Sbjct:  691 PGRLRRLQARADKAKEGEVTTEESLEAKEALLARGLEESKELLRLLFKSFVEVLTERLPPISADGDVPNLRAGDPNVNSSARD-PEATTMEIDNENGGDNDSQLNGQNKKISHNVGELEQWCLCTLGYLKSFSRQYATEIWSHIAMLDQEIFVGNIHPLIRKAAFSGLCRP 860          
The following BLAST results are available for this feature:
BLAST of EY756083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCBP1_ARATH1.538e-4253.49Nuclear cap-binding protein subunit 1 OS=Arabidops... [more]
NCBP1_ORYSJ6.686e-3848.54Nuclear cap-binding protein subunit 1 OS=Oryza sat... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-D07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756083 ID=EY756083; Name=EY756083; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGCGGACGCGTGCGCGGACGCGTGGGTCCTGCAAGGTTAAG
TCGTCTGAAATTACATGCCGAAAAAGCTAAAAACGAGGAGATATCAGCAA
AAGAGTCTTTAGAGGCCAAGGAGGCTCTTTTTGCTCGAGCTGTAGAAGAA
AATGAGGCACTATATCTTTCTCTTTACAGAAACTTCTCAAATGTGTTGAT
GGAACGCCTACCAGATGCATCTAGAGCTGGAACTTTGCAAGATTTAAAAT
CTACCCATGCAGATGCAATGGCTGTTGATCTTGAAGAGCCATCGGCAATG
GAACTGGACAATGAGAATGGAAGACCTAAAAAGAGTCAGTCAAATGGTGG
GAGCTCAGGCAATGTCTACAACATAGGTGAAAAGGAGCAGTGGTGTCTAT
CAACTCTGGGTTATGTGAAGGCCTTTTCAAGACAATATGCTTCTGAGATA
TGGCCACATATGGAGAAGCTGGATGCAGAGGTATTAAGTGAAGATACACA
TCCTCTTTTCCGCAGAGCAGTTTATTCTGGTCTACACCGACCCATCAACT
AGATGATGATTTGGTACCGCTAGTAGCTCTAATTGCTTGCTTGATATTTT
AGATACAAGAAAGTGTGATGGATCGCATGTAATTGCCGTGCGGCAAACAA
AACGGCTGTAGCTGTAGAAGTCAGTGGTCACCACAGAGCTAGTGTAGCCA
TGACCCATGAAGTTGCTACGATTACTGTACCATGATAGCTCTCCTAGAAG
TACAGGTTGTGATTAGATGTGCCATATTGGTAATGTGTGACATCATGGTT
GTAACGGGGAAAGGGGAATAATCATTGGCTATTAATAATTTGGATGGAAG
GGTACACATTCC
back to top