EY756066

Overview
NameEY756066
Unique NameEY756066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8493 contig Csv1_Contig8493:113..1012. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 404.445 bits (1038), Expect = 4.389e-112
Identity = 203/275 (73.82%), Postives = 225/275 (81.82%), Query Frame = 2
Query:   77 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRITNGLDLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFA-NISVTFCHQPGYVIFGNAK 898
            +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYYRITNGLD EDKLHPGG FDPLGLAKDP+Q ALLKVKE +NGRLAMFAMLGFF+QAYVTGE P EN A ++S  F +    VI G A+
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAE 275          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.371e-49
Identity = 103/203 (50.74%), Postives = 131/203 (64.53%), Query Frame = 2
Query:  257 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYRITNG----LDLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE YR   G    LD  D L+PGG FDPLGLA DPD FA LKVKE +NGRLAMF+ LGFF+QA VTG+ P +N  +
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTD 232          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.537e-48
Identity = 102/200 (51.00%), Postives = 133/200 (66.50%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D ++PGGSFDPLGLA+DP+ FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 253          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.424e-48
Identity = 102/200 (51.00%), Postives = 131/200 (65.50%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    I    + A+ A +++L+G  E YR+  G   ++ D ++PGG+FDPLGLA DPD FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPIYPGGNFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 257          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.424e-48
Identity = 103/200 (51.50%), Postives = 132/200 (66.00%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D L+PGGSFDPLGLA DP+ FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 247          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.424e-48
Identity = 103/200 (51.50%), Postives = 132/200 (66.00%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    ++   + A+ A +++L+G  E YRI  G   ++ D L+PGGSFDPLGLA DP+ FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 248          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.472e-48
Identity = 103/200 (51.50%), Postives = 131/200 (65.50%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGGSFDPLGLA DP+ FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 5.840e-48
Identity = 104/200 (52.00%), Postives = 132/200 (66.00%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    I+   + A+ A ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA DP+ FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 241          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 7.627e-48
Identity = 103/200 (51.50%), Postives = 131/200 (65.50%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR  +L        E P YLTGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G    ++   + A+ A ++VL+G  E YR+  G   ++ D L+PGGSFDPLGLA+DP+ FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 246          
BLAST of EY756066 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.962e-48
Identity = 103/200 (51.50%), Postives = 131/200 (65.50%), Query Frame = 2
Query:  260 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINL--VFAVIA-EIVLVGGAEYYRITNGL--DLEDKLHPGGSFDPLGLAKDPDQFALLKVKEXQNGRLAMFAMLGFFLQAYVTGESPXENFAN 844
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    ++   + A+ A ++VL+G  E YRI  G   ++ D L+PGGSFDPLGLA+DP+ FA LKVKE +NGRLAMF+M GFF+QA VTG+ P EN A+
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 244          
The following BLAST results are available for this feature:
BLAST of EY756066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
CB26_ARATH4.389e-11273.82Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE2.371e-4950.74Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY1.537e-4851.00Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY3.424e-4851.00Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB28_PEA3.424e-4851.50Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_PEA3.424e-4851.50Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB24_PETSP4.472e-4851.50Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB21_MAIZE5.840e-4852.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_PETSP7.627e-4851.50Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB2B_SOLLC9.962e-4851.50Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-B12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756066 ID=EY756066; Name=EY756066; organism=Citrus sinensis; type=EST; length=899bp
TTCGTCGACCACGCGTCCGAGCAGCAACATTCCGAAGATGGCTTCATTGG
CAGCATCGTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCTTGGC
AACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATC
AAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCG
CCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAG
CTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCT
CTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAG
ACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGC
AAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTGGTGC
TGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAACTGTG
GTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGGAAAC
ACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTGCTGT
CATTGCTGAGATTGTTCTTGTAGGTGGTGCTGAATATTATAGAATCACCA
ACGGTTTGGATTTGGAGGACAAGCTTCACCCAGGTGGGTCATTTGACCCA
CTGGGATTAGCAAAGGATCCTGACCAATTTGCATTGCTAAAAGTGAAGGA
GATNCAGAATGGAAGACTTGCAATGTTTGCCATGCTTGGGTTCTTTCTCC
AAGCTTATGTCACAGGTGAAAGTCCCGNTGAGAACTTTGCTAACATCTCA
GTGACCTTTTGCCACCAACCTGGTTACGTGATCTTCGGAAACGCAAAAA
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