EY756061

Overview
NameEY756061
Unique NameEY756061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY756061_ssr525 microsatellite EY756061_ssr525:525..536. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 1.214e-93
Identity = 173/232 (74.57%), Postives = 187/232 (80.60%), Query Frame = 1
Query:   28 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H               FYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ E+                   LPQEKKDDQK+VD  L +AIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 5.278e-89
Identity = 162/226 (71.68%), Postives = 182/226 (80.53%), Query Frame = 1
Query:   46 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K  E+                   +PQEKK+DQK+VD  L ++IEAVP+LK YLGARFSL  GMKPHELVF
Sbjct:    8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.536e-88
Identity = 165/233 (70.82%), Postives = 182/233 (78.11%), Query Frame = 1
Query:   25 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K  E+                   +PQ KKDDQK+VD  L +AIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.940e-87
Identity = 163/233 (69.96%), Postives = 180/233 (77.25%), Query Frame = 1
Query:   25 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD              FYPA+DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K  E+                   +PQ KKDDQK+VD  L +AIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 3.352e-43
Identity = 117/280 (41.79%), Postives = 149/280 (53.21%), Query Frame = 1
Query:    1 PRVRRVASMA------PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            PR  +VA         PK+ KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TSTKVDIS V + K   D YF K+  R                   + +++K DQK+VD  +   I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:   28 PRAAKVAKKVHPKGKKPKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLR-KPRHQEGEIFDTEKEKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 9.754e-43
Identity = 109/262 (41.60%), Postives = 146/262 (55.73%), Query Frame = 1
Query:   34 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+  R                   + +++K DQK+VD+ + + I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:   34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLR-KPRHQEGEIFDTEKEKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.664e-42
Identity = 109/263 (41.44%), Postives = 145/263 (55.13%), Query Frame = 1
Query:   31 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            PK+GKP  SRNP L+RGIG++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+  R                   + +++K DQK+VD+ +   I+A+P L+ YL + F+L  G+ PH+LVF
Sbjct:   37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR-KPRHQEGEIFDTEKEKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 2.173e-42
Identity = 109/262 (41.60%), Postives = 146/262 (55.73%), Query Frame = 1
Query:   34 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DISGV + +   D YF K+  R                   + +++K DQK+VD+ + + I+AVP L+ YL + F+L  G+ PH++VF
Sbjct:   37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLR-KPRHQEGEIFDTEREKYEITEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 3.707e-42
Identity = 111/268 (41.42%), Postives = 146/268 (54.48%), Query Frame = 1
Query:   16 VASMAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            V +   K+G+P  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTK+DIS V + K   D YF K+  R                   + +++K DQK+VD+ +   I+AVP L+ YL + F+L  G+ PH+LVF
Sbjct:   32 VKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR-KPRHQEGEIFDTEKERYQISEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288          
BLAST of EY756061 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 171.4 bits (433), Expect = 6.322e-42
Identity = 114/274 (41.61%), Postives = 150/274 (54.74%), Query Frame = 1
Query:    7 VRRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHDXXXXXXXXXXXXXXFYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVERXXXXXXXXXXXXXXXXXXXLPQEKKDDQKSVDTPLXQAIEAVPDLKAYLGARFSLRAGMKPHELVF 723
            V++ +S A K  + KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TSTKVDIS V + K   D YF K+  R                   + +++K DQK+VD+ +   I+AVP L+ YL ++FSL  GM PH+LVF
Sbjct:   36 VKKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLR-KPRHQEGEIFDTEKEKYEITEQRKADQKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
The following BLAST results are available for this feature:
BLAST of EY756061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR1.214e-9374.5760S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH5.278e-8971.6860S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH1.536e-8870.8260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH4.940e-8769.9660S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_MOUSE3.352e-4341.7960S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_PIG9.754e-4341.6060S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_HUMAN1.664e-4241.4460S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_BOVIN2.173e-4241.6060S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_CHILA3.707e-4241.4260S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_RAT6.322e-4241.6160S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-B07-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756061 ID=EY756061; Name=EY756061; organism=Citrus sinensis; type=EST; length=904bp
CCACGCGTCCGGCGGGTAGCATCAATGGCGCCGAAGCAAGGGAAGCCAAG
AGTGAGCAGGAATCCGGAGCTGATCCGAGGAATTGGAAAGTTCTCTCGTT
CAAAGATGTACCATAAGAGGGGTCTGTGGGCAATTAAAGCCAAAAACGGT
GGCGTCTTTCCTCGTCACGACCCTAAGCCCAAAGCCGCTGCTCCCGCCGA
GAAGCCCCCCAAGTTTTACCCCGCCGATGACGTCAAGAAACCACTCGTCA
ACAAGCGCAAGCCTAAACCCACCAAGCTTAGAGCAAGCATCACCCCAGGG
ACAGTGCTGATTATACTAGCTGGAAGGTTCAAGGGTAAGAGAGTTGTGTT
CCTGAAGCAGCTTCCATCTGGGTTGCTTCTAGTTTCTGGGCCATTTAAGA
TCAATGGTGTTCCTTTACGACGTGTGAACCAGTCTTACGTGATTGGAACT
TCTACCAAAGTTGATATCTCCGGAGTGAATGTGGATAAGTTTGATGATAA
GTATTTTGCCAAGGAAGTCGAGAGGAAGAAGAAGAAAGGAGAGAATGAGT
TCTTTGAGTCAGAGAAAGAGGGAGAGAAGTCGCTTCCTCAGGAGAAGAAG
GATGATCAGAAGTCCGTTGATACACCATTGATNCAGGCCATTGAGGCTGT
TCCAGACTTGAAGGCTTACCTTGGTGCTAGGTTTTCCCTCAGGGCCGGCA
TGAAACCTCATGAACTTGTCTTCTGAAAACATGTGAAACAATTTAGGATT
GCTTTGCTTTTCCTACTTGGTATGGTTTGCCTGAAATTTATTTACAAGTG
GAATCTTTGGTTCATGGATCAAACATCTAATTTTGGTATGAGTAAGAAAA
TGAATGGTTTCTTCAGGGACAATTGATACTGAAAAAAAAAAAAAAAAAAA
AAAA
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