EY756056

Overview
NameEY756056
Unique NameEY756056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:169..930. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 374.785 bits (961), Expect = 2.915e-103
Identity = 176/195 (90.26%), Postives = 183/195 (93.85%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGIVP 593
            PG+PRP YLDGSAPGDFGFD L LGEVP NLERYKESELIHCRWAMLAVPGI+VPEALGLGNWV+AQEWAA+PGGQATYLG PVPWGTLPTIL IEFL+IAFVEHQRSMEKD EKKKYPGGAFDPLG+SKDP KFEE KVKEIKNGRLALLA VGFCVQQSAY GTGPLENLATHLADPWHNNIGDVIIP+GI P
Sbjct:   51 PGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIPKGIFP 245          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 360.918 bits (925), Expect = 4.355e-99
Identity = 164/193 (84.97%), Postives = 178/193 (92.23%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPRGI 587
            PG+PRP +LDGS+PGDFGFDPL L  VPEN ER+KESE+ HCRWAML VPG+LVPEALGLGNWV+AQEWAA+P GQATYLGNPVPWG LPTIL IEFL+IAF E QR+MEKDPEKKKYPGGAFDPLGFSKDP KFEE K+KEIKNGRLA+LAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD++IPR I
Sbjct:   50 PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRNI 242          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.437e-35
Identity = 92/230 (40.00%), Postives = 121/230 (52.61%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPE-------------------------------------------NLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 566
            PG   P YLDGS  GD+GFDP  LG+  E                                            L+R++E ELIH RWAMLA  G +  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP K  + ++ EIK+ RLA++ F+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:   57 PGAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 282          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.795e-35
Identity = 93/230 (40.43%), Postives = 123/230 (53.48%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLE-------------------------------------------RYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGD 566
            PG   P +LDGS  GD+GFDP  LG+  E L+                                           R++E ELIH RWAMLA  G L  E L    W  A +   V G  ++YLG P+P+ ++ T++ IE L I ++E QR+ E D EK+ YPGG F DPLG + DP+K  + ++ EIK+ RLA++AF+GF VQ +A  G GPL N ATHL+DP H  I D
Sbjct:   60 PGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIID 285          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.291e-34
Identity = 84/191 (43.98%), Postives = 111/191 (58.12%), Query Frame = 3
Query:   24 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGL--GNWVQAQEW-----AAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR-SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVI 572
            P YL+G   GD+G+DP  LG+ PEN  +Y+  ELIH RWAML   G ++PEAL     N      W       + G    Y G  +P   L   +V E + +   E+ R +   D E K +PGG FDPLG +KDP++    KVKEIKNGRLA+ A +GF + Q+   G GP+ENLA HL+DP+ NN+  VI
Sbjct:   82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLSDPFGNNLLTVI 270          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.756e-34
Identity = 90/195 (46.15%), Postives = 109/195 (55.90%), Query Frame = 3
Query:   12 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQRSMEKDP----EKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            GEP P YL G  PGD+G+D   L   PE   R +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R   + P    E   YPGG+FDPLG + DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   63 GEP-PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 254          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.864e-33
Identity = 79/193 (40.93%), Postives = 108/193 (55.96%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 560
            PG   P YLDGS  GD GFDPL L E PE+L  + ++++++ RWAML V G+L+PE L     + A EW  +PG +  +  +        +   +E      +++  S+ +DP  K          YPG  F+PL F+       E K KE+ NGRLA+LAF+GF VQ + + G GP ENL  HLADPWHN I
Sbjct:   38 PGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAP-----LENKEKELANGRLAMLAFLGFLVQHNVH-GKGPFENLQQHLADPWHNTI 224          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.180e-33
Identity = 86/201 (42.79%), Postives = 113/201 (56.22%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDPEKKK---------YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 560
            PG   P YL GS  GD GFDPL L E PENL+ + ++EL++ RWAML V G+L+PE       +   EW     G+  Y      + +  T+ VIEF+   +VE +R        S+ +DP  K+         YPGG F+PL F+      +E K KE+ NGRLA+LAF+GF VQ +   G GP ENL  HL+DPWHN I
Sbjct:   59 PGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWHNTI 246          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.424e-33
Identity = 86/210 (40.95%), Postives = 111/210 (52.86%), Query Frame = 3
Query:    9 PGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQR--------SMEKDP---------EKKKYPGGA-FDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIPR 581
            PG   PP+LDGS PGDFGFDPL L   PE+L   +++EL+HCRWAML   GI +PE L     +    W     G+  Y  +        T+ ++E + I + E +R         +  DP             YPGG  FDPLG+ S  P K +E + KEIKNGRLA+LA +G   Q   Y GTGP++NL  HLADP H  I     P+
Sbjct:   70 PGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSW--YTAGEQEYFTDTT------TLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQH-IYTGTGPIDNLFAHLADPGHATIFAAFSPK 270          
BLAST of EY756056 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.083e-33
Identity = 89/197 (45.18%), Postives = 110/197 (55.84%), Query Frame = 3
Query:   12 GEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEHQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 557
            GEP P YL G  PGD+G+D   L   PEN  + +E E+IHCRWAML   G + PE L       G   W +A       GG   YLGNP  V   ++  I   + + +  VE  R          DP    YPGG+FDPLG ++DP+ F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HLADP +NN
Sbjct:   72 GEP-PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLADPVNNN 262          
The following BLAST results are available for this feature:
BLAST of EY756056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB11_SOLLC2.915e-10390.26Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU4.355e-9984.97Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB4B_ARATH4.437e-3540.00Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4A_ARATH5.795e-3540.43Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB26_ARATH1.291e-3443.98Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_SINAL3.756e-3446.15Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB120_HORVU1.864e-3340.93Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB24_ARATH3.180e-3342.79Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB12_SOLLC5.424e-3340.95Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2B_PINSY7.083e-3345.18Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-003-B01-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756056 ID=EY756056; Name=EY756056; organism=Citrus sinensis; type=EST; length=770bp
CCACGCGTCCGGGCGAGCCCCGGCCGCCTTATCTTGATGGTTCAGCCCCA
GGGGACTTTGGATTTGACCCACTTCGGCTTGGCGAAGTTCCTGAGAACCT
TGAGAGATACAAGGAGTCTGAACTCATTCACTGCAGATGGGCTATGCTTG
CTGTTCCAGGGATCTTGGTGCCAGAGGCATTGGGATTGGGCAACTGGGTG
CAGGCGCAAGAGTGGGCAGCAGTTCCTGGAGGACAAGCCACATACTTAGG
CAACCCTGTTCCATGGGGCACTCTCCCCACAATTTTGGTGATTGAATTCC
TTTCCATTGCCTTCGTTGAGCACCAACGCAGCATGGAGAAAGACCCCGAG
AAGAAGAAGTACCCCGGTGGTGCTTTCGACCCCTTGGGCTTCTCCAAGGA
CCCCCAGAAGTTCGAGGAATACAAAGTCAAGGAGATAAAAAATGGGCGTT
TGGCATTGTTGGCATTTGTGGGTTTCTGCGTGCAACAATCAGCATATCCG
GGCACAGGACCATTGGAGAACTTGGCAACTCACTTGGCTGATCCATGGCA
CAACAACATTGGGGACGTTATTATCCCCAGAGGGATTGTGCCTTGAAGAA
CTGCATTGTTAAATTATCCAGTCCACTGTAAAATTCCCTGGTAAAAGAGC
CTTTTATGAAACAGAATTCGTATCTTTCTGACTGTAAGATTAGAAAGTAA
TTTGTCCTCCATGACGNTCGTGCTAGAATCTAATACTACTGTGATTTGCC
GNAAAAAAAAAAAAAAAAAA
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