EY756013

Overview
NameEY756013
Unique NameEY756013
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length873
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY756013 vs. ExPASy Swiss-Prot
Match: NRAM6_ARATH (Metal transporter Nramp6 OS=Arabidopsis thaliana GN=NRAMP6 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 3.502e-26
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = 2 
Query:  575 FARVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYSALPKIRK 844
            FA VPLLKFTSSK KMG HANS+ I+++TWIIG LIM IN+YYL +SFIK L H ++ LV +VFLG+ GFS +A YLA ++Y  L K R+
Sbjct:  399 FALVPLLKFTSSKTKMGSHANSLVISSVTWIIGGLIMGINIYYLVSSFIKLLLHSHMNLVAIVFLGVLGFSGIATYLAAISYLVLRKNRE 488
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BLAST of EY756013 vs. ExPASy Swiss-Prot
Match: NRAM1_ARATH (Metal transporter Nramp1 OS=Arabidopsis thaliana GN=NRAMP1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.605e-25
Identity = 55/89 (61.80%), Postives = 67/89 (75.28%), Query Frame = 2 
Query:  575 FARVPLLKFTSSKVKMGMHANSIAITAITWIIGSLIMIINVYYLATSFIKFLFHGNLKLVEVVFLGIFGFSAMAVYLAGVAYSALPKIR 841
            FA VPLLKFTS K KMG H N +AITA+TW+IG LIM IN+YYL +SFIK L H ++KL+ VVF GI GF+ +A+YLA +AY    K R
Sbjct:  407 FALVPLLKFTSCKTKMGSHVNPMAITALTWVIGGLIMGINIYYLVSSFIKLLIHSHMKLILVVFCGILGFAGIALYLAAIAYLVFRKNR 495
The following BLAST results are available for this feature:
BLAST of EY756013 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NRAM6_ARATH3.502e-2662.22Metal transporter Nramp6 OS=Arabidopsis thaliana G... [more]
NRAM1_ARATH6.605e-2561.80Metal transporter Nramp1 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-F03-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY756013 ID=EY756013; Name=EY756013; organism=Citrus sinensis; type=EST; length=873bp
CCACGCGTCCGAAAACCAATTGCATCTGCTTCAAGTACGGCAACAGCAAA
AGCTGAAGAGGCTTCTGTTGACACCGAACCATAATTCATTCCCTTTTACT
GGAGAAACTACACGGTTGGATGGGAAACCTTTGGACATATCAACCTCCTC
CTGTTCCTTCCTTAGGGTCCAAAGACAAACAACCTGCCACGCTCTAATGG
GACTGGGCAGCCATCTGCAGGGGCTACTTCACAAAATGCTGCAAGACAGT
CTCAAGAAAAGCTCGTGTTTGGATCCAATGCAAGCCTCCATCCCAACGAA
ACACTAAAACCGGTAGCTGAAAAAGAGATAAAACAAGAGCTGCCTGAAAA
TAAAGAGGAGCCAAAGTTCCGGCCTTCTACAGCGAAGAAGTACTCATTGA
AAGGTTGATTAATTTATCTGGACAGCCAGTATTTATTGCCTCTAGGTCAT
CAACGCCCTTTACTTGACCTTTATGGATCAAAGATACTACATAACTGCAA
TTATCTGAGTGTTGTATCTATGGACAAATGCAACTTTAATATATGATGCC
ATGATGCAGGCAAAAAGACACTATTTTGCTCGTGTGCCACTTCTCAAGTT
TACCAGCAGCAAGGTGAAGATGGGGATGCATGCCAACTCAATTGCGATTA
CAGCTATTACATGGATCATCGGGTCCCTGATAATGATAATAAATGTATAC
TATCTCGCGACAAGCTTCATCAAGTTCCTTTTTCATGGCAATTTAAAACT
CGTGGAAGTTGTTTTCTTGGGAATATTTGGGTTTTCGGCAATGGCAGTAT
ATTTGGCTGGAGTGGCTTACTCTGCCCTTCCAAAAATAAGGAAGCTTCAC
ACTTTTGGCACTAACACACCTGA
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