EY756012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY756012 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 9.261e-49 Identity = 109/218 (50.00%), Postives = 132/218 (60.55%), Query Frame = 3 Query: 12 AVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYGQAPPAIIP-QAGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAGGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGEKLYPLVEQLERDAAAKVTGMLLEMDR 662 A+AQRKE+RR RLQAQFSQ+RPVAM +GQQ YGQAPPA+IP Q G+GYQQQLVPGMRP G P+P+FF +QQ P+M QM PRG +RYP GR G G +P P DMG +P + I AL++ L+NA+PEQQRT+LGE LYPLVEQ+E ++AAKVTGMLLEMD+ Sbjct: 391 AIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQH--SQQQNPMMQQQMHPRGRMFRYPQGR---------GGSGDVP-PYDMGNNMP---------LTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQ 587 HSP 2 Score: 27.335 bits (59), Expect = 9.261e-49 Identity = 14/16 (87.50%), Postives = 14/16 (87.50%), Query Frame = 1 Query: 691 EALXAKVAEAMXVLRS 738 EAL AKVAEAM VLRS Sbjct: 598 EALKAKVAEAMDVLRS 613 HSP 3 Score: 20.7866 bits (42), Expect = 9.261e-49 Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2 Query: 659 QTEVLHLSES 688 QTEVLHL ES Sbjct: 587 QTEVLHLLES 596
BLAST of EY756012 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 9.906e-20 Identity = 80/225 (35.56%), Postives = 109/225 (48.44%), Query Frame = 3 Query: 12 AVAQRKEERRARLQAQFSQMR-PVAMXXXXXXXXXXXXXXXXXLGQQFLYGQAPPAIIPQA--GFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQ--QPLPIMPHQMPPRGHAYRYPL--GRNMQDFPFDMGA-GGMLPVPVDMGAGIPRRDASVGQPMPITALSTALANASPEQQRTLLGEKLYPLVEQLERDAAAKVTGMLLEMDR 662 A+AQRKE+RRA LQA FSQ+R P M Q GQ +++P G+G+Q Q +PGMRP P NF Q Q +M H+ P G Y GRN D G ++P+P+D + I + A + +PI+ L+++LA+ASP + +LGE+LYPLVE+ E AKVTGMLLEMD+ Sbjct: 405 ALAQRKEDRRAHLQALFSQIRAPGPMSGFHHPPGGPMPGPP----QHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM-HRNPSPGMRYMNGASNGRNGMDSSVPQGILPPIIPLPID-ASSISHQKAPL---LPISKLTSSLASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQ 619 HSP 2 Score: 22.3274 bits (46), Expect = 9.906e-20 Identity = 10/15 (66.67%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 691 EALXAKVAEAMXVLR 735 EAL +KV+EA+ VLR Sbjct: 630 EALKSKVSEALDVLR 644
BLAST of EY756012 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 4.790e-19 Identity = 75/228 (32.89%), Postives = 104/228 (45.61%), Query Frame = 3 Query: 12 AVAQRKEERRARLQAQFSQMR------PVAMXXXXXXXXXXXXXXXXXLGQQFLYGQAPPAIIPQA--GFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPIMPHQMPPRGHAYRYPLGRNMQDFPFDMGAG-GMLPVPVDMGAGIPRRDASVGQPMPITA--LSTALANASPEQQRTLLGEKLYPLVEQLERDAAAKVTGMLLEMDR 662 A+AQRKEER+A LQ+ F+Q+R PV F+ G ++P G+GYQ Q +PGMRP P PNF QQ Q + +A R+ G + + A G++P+P++ A +P P+T L++ LA ASP++ +LG+ LYPLVEQ E AAKVTGMLLEMD+ Sbjct: 401 ALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFI-GHNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPRVGFRRGANNMQQQ----FQQQQMLQQNASRFMGGAGNRRNGMEASAPQGIIPLPLNASANSHNAPQRSHKPTPLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQ 622 HSP 2 Score: 23.483 bits (49), Expect = 4.790e-19 Identity = 11/15 (73.33%), Postives = 13/15 (86.67%), Query Frame = 1 Query: 691 EALXAKVAEAMXVLR 735 EAL AKV+EA+ VLR Sbjct: 633 EALKAKVSEALDVLR 647
BLAST of EY756012 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11 Identity = 71/238 (29.83%), Postives = 91/238 (38.24%), Query Frame = 3 Query: 12 AVAQRKEERRARLQAQFSQMRPVAMXXXXXXXXXXXXXXXXXLGQQFLYGQAPPAIIPQAGFGYQQQLVPGMRPAGAPMPNFFXXXXXXXXXXXXXXXXXXXXXXXXTQQPLPI------MPHQMPPRGHAYRYPLGRNMQDFPFDMGAGGML---PVPVDMGAGIPRRDASVGQPMPITALSTA-------------LANASPEQQRTLLGEKLYPLVEQLERDAAAKVTGMLLEMD 659 A+AQRK+ RR L++Q +Q M G Q GQ P G+G Q +PGM P PM + QPLP MP Q+P G A YP+ P A G P PV G+P G MP A LA A+P +Q+ +LGE LYPL+ + + + A K+TGMLLEMD Sbjct: 403 ALAQRKDVRRQALESQIAQRAQQRMQYGAGFP-----------GMQGYMGQPMYGYPPMPGYG---QPMPGMPPVRGPMMGY---------PGAPQNMMQSRPRFNPNGQPLPGGVPAYGMPPQVPYPG-APGYPVRPGGARIPAAPNANGPRNGGPSPVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMD 616 The following BLAST results are available for this feature:
BLAST of EY756012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY756012 ID=EY756012; Name=EY756012; organism=Citrus sinensis; type=EST; length=931bpback to top |