EY755962

Overview
NameEY755962
Unique NameEY755962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13293 contig Csv1_Contig13293:1..640. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755962 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 8.501e-65
Identity = 130/189 (68.78%), Postives = 148/189 (78.31%), Query Frame = 3
Query:    3 TRPEHERTRLCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTLKEA---GESQ--YQPMISNRKSLLEATPQSFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTKQKQT---SAWTSGWKKLGKLTKMTATDHQDIRPQVPNAA--EQTRKTPRRWRNSIS 539
            T  EHER RLCRVMDCQKLS+DACMHAAQNERLPLR+VVQVLFSEQ+KISNA+AN++LKE+   GE+   YQPMI NRK+L+EATPQSFQ  WA AKKDINTLKFELE+VK KY+ELQN+ME +QRQF+K  K K T   SAWTSGWKKL KLTKM+  +  DI      A       + PRRWRNSIS
Sbjct:  557 TLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALANTSLKESTTLGEAMGTYQPMIPNRKTLIEATPQSFQARWAAAKKDINTLKFELETVKTKYVELQNEMEVMQRQFEKTGKVKNTPSSSAWTSGWKKLSKLTKMSGQESHDISSGGEQAGVDHPPPRKPRRWRNSIS 745          
BLAST of EY755962 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.230e-55
Identity = 121/205 (59.02%), Postives = 141/205 (68.78%), Query Frame = 3
Query:    3 TRPEHERTRLCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTL------KEAGESQYQPMISNRKSLLEATPQSFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFD------------KLTKQKQ----TSAWTSGWKKLGKLTKMTATDHQ---DIRPQVPNAAE-QTRKTPRRWRNSIS 539
            T  EHER RLCRVMDCQKLS DACMHAAQNERLPLR+VVQVLF+EQ+KISNA+A+S+          G      M + R+ LL+ TPQSFQEGWA AKKDINTLKFELES+KAKYLELQ++M+ LQ+Q D            K+ KQ+Q     SAW+SGWKKLG+L KM+  D      + P  P   E   RK PRRWRNSIS
Sbjct:  560 TLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMDALQKQVDGRGGGAPSPAAAKIGKQQQQGTSASAWSSGWKKLGRLAKMSGADAAAGGGVAP--PGGGEAAARKGPRRWRNSIS 762          
BLAST of EY755962 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.052e-18
Identity = 57/157 (36.31%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   12 EHERTRLCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTL----KEAGESQYQPMISNRKSLLEATPQ---SFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTKQKQ----------TSAWTSGWKKLG 431
            E ER  LCR++DCQKLS++AC HAAQNERLPLRI+VQVLF EQ+++  ++A   L     + G  Q       R       P        GWATA ++   LK  ++S++ +  EL+ +   ++++ +KL K  +          +  W +  KKLG
Sbjct:  464 ETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSVAGCFLVSDNLDGGSRQL------RSGGYVGGPNEGGGGGGGWATAVRENQVLKVGMDSMRMRVCELEKECSNMRQEIEKLGKTTKGGGSASNGVGSKTWENVSKKLG 614          
BLAST of EY755962 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.390e-13
Identity = 47/145 (32.41%), Postives = 88/145 (60.69%), Query Frame = 3
Query:   12 EHERTRLCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTLKEAGESQYQPMISNR--KSLLEATPQSFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTKQKQTSAWTSGWKKLGKLT 440
            + ++ +L +++D QKLS +A  HAAQNERLPL+ +VQVL+ EQ+K+ +++ +S   E  + + Q   S R     L AT  S ++ +A+ +++   LK EL  ++ +  +L+ +   ++R   +   +K  S+++   KK+GKL+
Sbjct:  440 DSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSAT-MSPKDNYASLRRENRELKLELARLRMRLNDLEKEHICMKRDMQRSHSRKFMSSFS---KKMGKLS 580          
The following BLAST results are available for this feature:
BLAST of EY755962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RPT3_ARATH8.501e-6568.78Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.230e-5559.02Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH2.052e-1836.31BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH3.390e-1332.41BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-002-A05-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755962 ID=EY755962; Name=EY755962; organism=Citrus sinensis; type=EST; length=640bp
CCACGCGTCCGGAGCATGAAAGGACACGTCTCTGCCGTGTGATGGATTGC
CAGAAACTGTCGATTGATGCTTGCATGCATGCCGCACAAAATGAAAGACT
ACCCCTAAGGATTGTAGTTCAAGTCCTTTTCTCTGAGCAGATAAAGATTA
GCAATGCTATGGCCAACAGCACCCTGAAAGAAGCTGGAGAAAGTCAATAC
CAGCCAATGATATCAAACAGAAAATCTCTACTTGAAGCGACACCACAGTC
ATTCCAAGAAGGATGGGCAACTGCTAAGAAGGACATTAACACACTCAAAT
TTGAGCTAGAGAGTGTCAAGGCTAAGTATCTTGAACTTCAAAATGACATG
GAGACTCTACAGAGACAGTTTGATAAGTTGACAAAGCAGAAACAAACTTC
GGCATGGACTAGCGGGTGGAAGAAACTGGGCAAACTCACCAAGATGACAG
CTACAGATCACCAGGATATAAGACCGCAGGTTCCGAATGCTGCAGAACAG
ACGAGAAAAACACCTAGAAGATGGAGAAATTCAATTTCTTGAACTCTGGA
GTAACAAGCCAAGGACTGTCTTTAAATTTGGATTCTGTATTTCCATTGGT
TTATTTTATTCTACTCTCAATCATGGTTTTTATAGCANNN
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