EY755921

Overview
NameEY755921
Unique NameEY755921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9708 contig Csv1_Contig9708:676..1555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY755921 vs. ExPASy Swiss-Prot
Match: RU2A_ARATH (U2 small nuclear ribonucleoprotein A' OS=Arabidopsis thaliana GN=At1g09760 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.807e-23
Identity = 63/120 (52.50%), Postives = 74/120 (61.67%), Query Frame = 2 
Query:   23 HSFTKKPNYRLYVIHKLKSLRVLDFKKVKNKERXXXXXXXXXXXXXXXXXXXXXXTLMXXXXXXXXXXXXQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEEVLKSGQLPADLKIPD 382
            ++ TKK NYRLYVIHKLKSLRVLDF K+K KER                       +              +TPKVVAPT EQI+AIKAAI+NSQT+EE+ARLE+ LK GQ+PA L IPD
Sbjct:  123 NNITKKANYRLYVIHKLKSLRVLDFIKIKAKERAEAASLFSSKEAEEEVKKVSREEVKKVSETAENP----ETPKVVAPTAEQILAIKAAIINSQTIEEIARLEQALKFGQVPAGLIIPD 238
The following BLAST results are available for this feature:
BLAST of EY755921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RU2A_ARATH2.807e-2352.50U2 small nuclear ribonucleoprotein A' OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-D12-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755921 ID=EY755921; Name=EY755921; organism=Citrus sinensis; type=EST; length=878bp
TCGGTAGACCCCGCGTCCGGGACATAGTTTCACCAAAAAGCCCAATTATC
GGTTGTATGTGATTCACAAGCTGAAATCTCTCCGTGTTTTGGATTTCAAG
AAGGTGAAAAACAAGGAAAGAATGGAAGCAGCAAGTCTGTTTGCCTCAGA
AGAAATGGAAGAGGAGGCTAAGAAGGAATCTATGAAGACATTGATGCCAG
TTGAGGTTCCGAATGTTTCAGAAGAAGAGGAACAACAAACTCCAAAAGTG
GTTGCCCCCACTCCTGAGCAGATTATAGCCATCAAGGCTGCTATTGTGAA
TTCTCAGACACTTGAAGAGGTTGCAAGACTTGAAGAGGTTCTGAAGTCAG
GTCAGCTTCCTGCAGATTTGAAAATTCCGGACTATGATTCTGGCAGCAAG
GATGTGAAAGAAAATGATGAGAAAATGGTACCTGACGTTGAAAATGAGGC
TGATGTTGAACCAAACAATGTGGAAAACCAGAAGAATGATGAACTTGCTG
CGATGGAACAGGACTAGAAGGGGTGATTCATGTGCAAGTCCATCTGAAAG
CATCCAAAAGTCCATCCGAAAGCTTCTCACTTGTGTGCCTGCACCCATAT
ACCAGATCTAAGTTCTGTTTAGACTTTTTCTTCCCCCCTCATTTCCTCCT
CTACCACATCTGCCTTGTGGTGACAGGAACTCAAAATGGGAGGGGTGCTT
GCTCATGCAAATGTANGCAGGGGTTTTGTATAACTTCATTTGTTANGAAT
TTTCACTATTAGTTTNGCCCCAGTGCATCTGGAAATATAACATAGTACGC
TGCTAGCTTATCTGCTACATTATCTACTTTATGGAACNAGGACCTTCGGC
TAAAAAAAAAAAAAAAAAAAAAAAAAAA
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