EY755920

Overview
NameEY755920
Unique NameEY755920
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_NICBE (DNA gyrase subunit B, chloroplastic/mitochondrial OS=Nicotiana benthamiana GN=GYRB PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.260e-43
Identity = 86/149 (57.72%), Postives = 110/149 (73.83%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            GLG  GEDF  +ALRYH+I+  TDAD  GAHI TL+LTFF++YQ  LF++  IYV VPPLYK ++GK V  CYDDA+L  V  SFPS+A  +IQR  GL  MMP ++W TT+NP+ R+L+QL ++DA + +VVFSSLMG+  D  K LI
Sbjct:  569 GLGVKGEDFKKEALRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFEEGCIYVGVPPLYKVERGKQVYYCYDDAELKKVQRSFPSNASYNIQRFKGLGEMMPAQLWETTMNPETRLLKQLVVEDAAEANVVFSSLMGSRVDIRKQLI 717          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_ORYSJ (DNA gyrase subunit B, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=GYRB PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 1.049e-41
Identity = 86/163 (52.76%), Postives = 111/163 (68.10%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLIXXXXXXXXXXHLEI 512
            GLG  GEDF  +ALRYH+I+  TDAD  GAHI TL+LTFF++YQ  LFD+  IYV VPPLYK ++GK    CYDDA L  + ++FP++A   IQR  GL  MMP ++W TT++P+ RML+QL ++DA + +VVFSSLMG   D  K LI          HL+I
Sbjct:  567 GLGVKGEDFNKEALRYHKIVILTDADVDGAHIRTLLLTFFFRYQKALFDEGCIYVGVPPLYKVERGKQAHYCYDDADLKELVNTFPTNASYHIQRFKGLGEMMPAQLWETTMDPERRMLKQLKVEDAAEANVVFSSLMGTRVDVRKQLIQNAASMVNLEHLDI 729          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRBP_ARATH (DNA gyrase subunit B, chloroplastic OS=Arabidopsis thaliana GN=GYRBC PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.790e-41
Identity = 86/163 (52.76%), Postives = 110/163 (67.48%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLIXXXXXXXXXXHLEI 512
            GLG  GEDF  + LRYH+I+  TDAD  GAHI TL+LTFF++YQ  LFD   IYV VPPL+K ++GK    CYDDA L  + +SFP +A  +IQR  GL  MMP ++W TT+NP  R+L+QL +DDA +T++VFSSLMGA  D  K LI          +L+I
Sbjct:  499 GLGVKGEDFNKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKQAHYCYDDAALKKITASFPGNASYNIQRFKGLGEMMPAQLWETTMNPDTRILKQLVVDDAAETNMVFSSLMGARVDVRKELIKSAATRMNLENLDI 661          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRBM_ARATH (DNA gyrase subunit B, mitochondrial OS=Arabidopsis thaliana GN=GYRBM PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.515e-40
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            GLG  GEDF  + LRYH+I+  TDAD  GAHI TL+LTFF++YQ  LFD   IYV VPPL+K ++GK  Q CYDDA L  + S+FP++A  +IQR  GL  MMP ++W TT+NP+ R+L+QL +DD  + ++ FSSLMGA  D  K LI
Sbjct:  570 GLGVKGEDFKKENLRYHKIIILTDADVDGAHIRTLLLTFFFRYQRALFDAGCIYVGVPPLFKVERGKNAQYCYDDADLKKITSNFPANASYNIQRFKGLGEMMPEQLWETTMNPETRILKQLVVDDIAEANMTFSSLMGARVDVRKELI 718          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_SYNY3 (DNA gyrase subunit B OS=Synechocystis sp. (strain PCC 6803) GN=gyrB PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.519e-32
Identity = 68/139 (48.92%), Postives = 94/139 (67.63%), Query Frame = 3
Query:   24 GLGEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMG 440
            GLG  G+DF I +LRYH+++  TDAD  GAHI TL+LTFFY+YQ  L D  +IY+  PPLYK ++GK    CY D +L    S FP +A  +IQR  GL  MMP ++W TT+NP+ R ++++ I+DA +   +F+ LMG
Sbjct:  916 GLGIKGDDFDISSLRYHRVVIMTDADVDGAHIRTLLLTFFYRYQRDLVDQGYIYIACPPLYKLERGKNHFYCYSDRELQEQISQFPPNANYTIQRFKGLGEMMPQQLWDTTMNPESRTMKRVHIEDAAEADRIFTVLMG 1054          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_BACHD (DNA gyrase subunit B OS=Bacillus halodurans GN=gyrB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.056e-28
Identity = 64/156 (41.03%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    6 VRIRVPGLGE-MGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            +R  +  LG  +G+DF I+  RYH+I+  TDAD  GAHI TL+LTFFY+Y   L +  ++Y+  PPLYK  +GK +Q  Y DA+L  + S  P  A   IQR  GL  M P ++W TT++P  R + Q+ ++DA +   +F  LMG   +  +  I
Sbjct:  470 IRAIITALGTGIGDDFDIEKARYHKIIIMTDADVDGAHIRTLILTFFYRYMRPLIEHGYVYIAQPPLYKVQQGKDIQYAYGDAELQEILSQLPDKAKPGIQRYKGLGEMNPSQLWETTMDPGQRTVLQVTLEDAMKADEIFEILMGDRVEPRRDFI 625          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_BACAN (DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.277e-27
Identity = 59/156 (37.82%), Postives = 93/156 (59.62%), Query Frame = 3
Query:    6 VRIRVPGLG-EMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            VR  +  +G  +G DF I+  RYH+++  TDAD  GAHI TL+LTFFY+Y   + +  +IY+  PPL+K  +GK +Q  Y++ +L  + +  P+     IQR  GL  M P ++W TT++P++R L Q+++ DA +    F  LMG   +  +  I
Sbjct:  473 VRTIITAIGTNIGGDFDIEKARYHKVIIMTDADVDGAHIRTLLLTFFYRYMRQIIEHGYIYIAQPPLFKVQQGKKIQYAYNEKELEKILAELPAQPKPGIQRYKGLGEMNPTQLWETTMDPEVRSLLQVSLQDAIEADETFEILMGDKVEPRRNFI 628          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_BACSU (DNA gyrase subunit B OS=Bacillus subtilis GN=gyrB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.774e-26
Identity = 59/156 (37.82%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    6 VRIRVPGLGE-MGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            VR  +  LG  +GEDF ++  RYH+++  TDAD  GAHI TL+LTFFY+Y   + ++ ++Y+  PPLYK  +GK V+  Y+D +L  +  + P      +QR  GL  M   ++W TT++P  R L Q+ ++DA      F  LMG   +  +  I
Sbjct:  471 VRSMITALGTGIGEDFNLEKARYHKVVIMTDADVDGAHIRTLLLTFFYRYMRQIIENGYVYIAQPPLYKVQQGKRVEYAYNDKELEELLKTLPQTPKPGLQRYKGLGEMNATQLWETTMDPSSRTLLQVTLEDAMDADETFEMLMGDKVEPRRNFI 626          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_MYCHP (DNA gyrase subunit B OS=Mycoplasma hominis (strain ATCC 23114 / IFO 14850 / NCTC 10111 / PG21) GN=gyrB PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 3
Query:   45 DFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNSIQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMG 440
            +F I  L+YH+I+  TDAD  GAHI TL+LTFFY+Y   L +  ++Y+  PPLYK   GK V+  Y+D Q   + +        +IQR  GL  M P ++W TT++P+ R + Q+ IDDA     VF++LMG
Sbjct:  495 EFDINKLKYHKIIIMTDADVDGAHITTLLLTFFYRYMKPLIEYGFVYLAQPPLYKITSGKNVEYAYNDLQKEQIMAKLEDKRNVAIQRYKGLGEMDPEQLWETTMDPETRKMLQVQIDDAAICDTVFATLMG 626          
BLAST of EY755920 vs. ExPASy Swiss-Prot
Match: GYRB_CLOAB (DNA gyrase subunit B OS=Clostridium acetobutylicum GN=gyrB PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.289e-23
Identity = 60/148 (40.54%), Postives = 85/148 (57.43%), Query Frame = 3
Query:   30 GEMGEDFMIQALRYHQILTSTDADGYGAHILTLMLTFFYKYQNTLFDDCWIYVCVPPLYKDDKGKLVQGCYDDAQLNNVHSSFPSHALNS-IQRLSGLRYMMPVRMW*TTLNPQIRMLRQLAIDDATQTHVVFSSLMGAMADTLKGLI 470
            G +G+DF +  LRYH+I+  TDAD  GAHI TL+LTFFY+Y   L  +  +++  PPLYK  K +     Y D +L +V         N+ IQR  GL  M P ++W TT+NP+ R L ++ I+DA     +F+ LMG   D  +  I
Sbjct:  478 GGIGKDFDVSKLRYHKIIIMTDADVDGAHIRTLILTFFYRYMTELISEGHVFIAQPPLYKVTKTRKEYYAYSDKELEDVLQDVGGKDKNTDIQRYKGLGEMNPEQLWETTMNPEQRTLIKVNIEDAMAADEIFTILMGDKVDPRRKFI 625          
The following BLAST results are available for this feature:
BLAST of EY755920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GYRB_NICBE4.260e-4357.72DNA gyrase subunit B, chloroplastic/mitochondrial ... [more]
GYRB_ORYSJ1.049e-4152.76DNA gyrase subunit B, chloroplastic/mitochondrial ... [more]
GYRBP_ARATH1.790e-4152.76DNA gyrase subunit B, chloroplastic OS=Arabidopsis... [more]
GYRBM_ARATH1.515e-4055.03DNA gyrase subunit B, mitochondrial OS=Arabidopsis... [more]
GYRB_SYNY31.519e-3248.92DNA gyrase subunit B OS=Synechocystis sp. (strain ... [more]
GYRB_BACHD5.056e-2841.03DNA gyrase subunit B OS=Bacillus halodurans GN=gyr... [more]
GYRB_BACAN3.277e-2737.82DNA gyrase subunit B OS=Bacillus anthracis GN=gyrB... [more]
GYRB_BACSU2.774e-2637.82DNA gyrase subunit B OS=Bacillus subtilis GN=gyrB ... [more]
GYRB_MYCHP1.988e-2443.18DNA gyrase subunit B OS=Mycoplasma hominis (strain... [more]
GYRB_CLOAB1.289e-2340.54DNA gyrase subunit B OS=Clostridium acetobutylicum... [more]

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Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-D11-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755920 ID=EY755920; Name=EY755920; organism=Citrus sinensis; type=EST; length=892bp
CCCGCGTCCGAATTCGTGTTCCCGGACTTGGAGAAATGGGAGAGGATTTT
ATGATACAGGCTCTGCGATATCATCAGATCCTCACATCAACAGATGCTGA
CGGCTACGGTGCTCACATCCTAACGCTGATGTTGACATTTTTCTACAAAT
ATCAAAACACCTTATTTGATGACTGTTGGATTTATGTCTGCGTTCCACCC
CTCTACAAAGACGACAAGGGAAAGCTGGTACAGGGCTGCTATGATGATGC
ACAGCTGAATAATGTCCATAGCTCCTTCCCTTCACATGCTTTGAATAGCA
TTCAAAGGCTCTCAGGCCTGAGATACATGATGCCTGTGCGGATGTGGTAG
ACAACACTGAACCCTCAGATCCGAATGCTTAGGCAACTGGCGATTGACGA
TGCAACACAAACACATGTTGTGTTCTCCTCCCTCATGGGGGCCATGGCGG
ACACTCTGAAGGGACTCATACAGAATGCTGCAAACCTCCTAAACCTGCAA
CATCTTGAGATCTAAGCCATCACTTAGAATGAGATCGTCATTCTTTGCAT
GTGAAACTCTGGAGAACATTGCTCCTTTATCGGAGAGCACAATGAAGATG
ATTCTATTCTTGAACATAGCTATCTGAACAGCCGTGCTAGTGTTAATACG
CAAGATTTATGTACTTTCTGCACAGTTCTTAGGGCTAGATGGATATTGAC
ATTGCATAGTTGCATATTAAAATTTACTGGCTCTGATGTAACGTGAACAG
TATGTGGATTTATCTCAAACTGATATCCTGAANATTTAATTTCGGAGATG
ACACAAAGATGCCCGACCCTCTGGAGGATCGAGGTAGCATATCTCTGATG
CAAAATATAACCCATCGAATGTGCCCCGCATTCATTCACTGG
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