EY755912

Overview
NameEY755912
Unique NameEY755912
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Sweet orange leaf, field plant Bcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5788 contig Csv1_Contig5788:258..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY755912 vs. ExPASy Swiss-Prot
Match: KING1_ARATH (SNF1-related protein kinase regulatory subunit gamma 1 OS=Arabidopsis thaliana GN=KING1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 56/158 (35.44%), Postives = 89/158 (56.33%), Query Frame = 2
Query:   11 ADLWLPFMSSDEVITIQSNELILEAFKRMKDNNIGGIPVVEGQQKKIVGNVSIRDIRHLLLKPELFSNFRQLTVRDFMNAVVPTTPDSGKVIPP-----ITCQLESTLGSVIHSLASKSVHRIYXXXXXXXXXXXXITLRDVISCFIFEPPNHLDNYF 469
            +++ LP MS D +I I  +E +L+AFK M+   IGGIPV+E   +K VGN+S+RD++ LL  PE++ ++R +T ++F+ +V       G    P     I C    TL  +I  L ++ +HRIY            ITLRD+I+  + EP  +  ++F
Sbjct:  256 SEVGLPIMSKDHIIKIYEDEPVLQAFKLMRRKRIGGIPVIERNSEKPVGNISLRDVQFLLTAPEIYHDYRSITTKNFLVSVREHLEKCGDTSAPIMSGVIACTKNHTLKELILMLDAEKIHRIY-VVDDFGNLEGLITLRDIIARLVHEPSGYFGDFF 412          
The following BLAST results are available for this feature:
BLAST of EY755912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KING1_ARATH7.223e-2235.44SNF1-related protein kinase regulatory subunit gam... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS13-C1-001-001-D02-CT.F Sweet orange leaf, field plant B Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY755912 ID=EY755912; Name=EY755912; organism=Citrus sinensis; type=EST; length=655bp
CCACGCGTCCGCTGATCTATGGCTTCCGTTCATGTCTTCTGATGAGGTTA
TTACCATACAGAGCAATGAACTGATTCTGGAAGCTTTCAAACGGATGAAA
GATAACAATATTGGTGGCATTCCAGTCGTAGAGGGACAACAAAAGAAAAT
TGTGGGAAATGTAAGCATAAGAGATATCAGACACTTGCTGCTCAAACCAG
AACTCTTCTCCAATTTCAGGCAGCTTACGGTCAGAGATTTCATGAATGCT
GTGGTACCAACCACCCCAGATTCTGGGAAAGTCATCCCACCAATAACATG
CCAGCTGGAGTCAACTCTCGGTAGTGTGATCCACAGTCTTGCTTCCAAGT
CTGTTCACAGAATCTATGTGGTAGCTGGCGAGGGAGCTGAAGTTGTTGGT
GTAATTACACTCAGAGATGTAATCTCTTGCTTCATCTTCGAACCACCTAA
CCATTTGGACAACTACTTTGGGTTTTCGGTCAAAGATCTGTTGAACCAGT
GAGATTTTTGTTATAGAAGATCTCTGACAGCTTGAATAAACTCGCGGTGT
AATCAATTTGGCTGCGAACAAAGACGAATCGTATTACTCTCAGTTATTAA
CAATACATGTACTGTTTTTTCATGTAATTCCAGCTGAAATACCGGGGAGT
TTTGT
back to top