EY729989

Overview
NameEY729989
Unique NameEY729989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY729989_ssr56 microsatellite EY729989_ssr56:56..67. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of EY729989 vs. ExPASy Swiss-Prot
Match: MEMP_RALEH (Membrane protein OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=H16_A0667 PE=3 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 3.284e-73
Identity = 131/191 (68.59%), Postives = 152/191 (79.58%), Query Frame = 2
Query:    2 EGKLHKFDTTSTTYFGLVLLLLPRFGVMTWKDVQSRIPWGTVIVFGVGISLGTALLTTQAGQWLGNQVVAHTGLDHLGPXXXXXXXXXXXXXXHLGFASATALTSAMLPILISVLATLPGDFSRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFNAKQFAKVGILVTIIGYALMMLMGMTYWRWLGWL 574
            EGKLH FDT + T+ GLV+L++PR GVM WK +Q R PWGT+IVFGVGISLGTALL+T AGQWLG  VV H+GL   G               HLGFASATALT+A+LPILI+VL TLPGD +R+GMTMLLGF VS+GFILPINAPQNMVCLGTETFN +QFA++GI VTIIGYA+M+L   TYWRWLGW+
Sbjct:  323 EGKLHSFDTATVTFVGLVILMMPRIGVMDWKTMQQRTPWGTLIVFGVGISLGTALLSTNAGQWLGQFVVTHSGLAAHGALLVFAILSAFLILIHLGFASATALTAALLPILIAVLQTLPGDINRVGMTMLLGFTVSFGFILPINAPQNMVCLGTETFNGRQFARIGIPVTIIGYAMMLLFAATYWRWLGWV 513          
BLAST of EY729989 vs. ExPASy Swiss-Prot
Match: Y608_HAEIN (Uncharacterized transporter HI0608 OS=Haemophilus influenzae GN=HI0608 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.313e-13
Identity = 43/169 (25.44%), Postives = 78/169 (46.15%), Query Frame = 2
Query:   50 LVLLLLPRFGVMTWKDVQSRIPWGTVIVFGVGISLGTALLTTQAGQWLGNQVVAHTGLDHLGPXXXXXXXXXXXXXXHLGFASATALTSAMLPILISVLATLPGDFSRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFNAKQFAKVGILVTIIGYALMMLMGMTYW 556
            L  +++   GV +WK +QS   WG +++FG G++L   L  + A + L + +V      H                    F S TA  + ++PI IS+  +L      +G+ +++G   S  F+LP+  P N +  G+      +  KVG L+ ++   ++  MG  +W
Sbjct:  296 LAAIVICSTGVASWKQIQSNTDWGVLMLFGGGLTLSAVLKDSGASKILADSIVFMIDGQHF---YLIGLLVAAFIIFLTEFTSNTASAALLVPIFISIAQSL--GMPEIGLALIIGIGASCAFMLPVATPPNAIVFGSGQVKQSEMVKVGFLLNLVCVVVIATMGYMFW 459          
BLAST of EY729989 vs. ExPASy Swiss-Prot
Match: S13A4_HUMAN (Solute carrier family 13 member 4 OS=Homo sapiens GN=SLC13A4 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 53/201 (26.37%), Postives = 88/201 (43.78%), Query Frame = 2
Query:    2 EGKLHKFDTTSTTYFGLVLLLLPR----FG----------------VMTWKDVQSRIPWGTVIVFGVGISLGTALLTTQAGQWLGNQVVAHTGLDHLGPXXXXXXXXXXXXXXHLGFASATALTSAMLPILISVLATLPGD--FSRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFNAKQFAKVGILVTIIGYALMML 538
            E K ++ D T + + G +L L+P     FG                ++TWKD Q  +PW  VI+ G G +L +   ++    W+GNQ+++ + L    P                 F S  A  +  LPIL S+  TL  +  ++ + +TM + F V    +LP+  P N +         K   K G+ V +IG  ++M+
Sbjct:  406 EKKGYRTDATVSVFLGFLLFLIPAKKPCFGKKNDGENQEHSLGTEPIITWKDFQKTMPWEIVILVGGGYALASGSKSSGLSTWIGNQMLSLSSL----PPWAVTLLACILVSIVTEFVSNPATITIFLPILCSLSETLHINPLYTLIPVTMCISFAV----MLPVGNPPNAIVFSYGHCQIKDMVKAGLGVNVIGLVIVMV 598          
The following BLAST results are available for this feature:
BLAST of EY729989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MEMP_RALEH3.284e-7368.59Membrane protein OS=Ralstonia eutropha (strain ATC... [more]
Y608_HAEIN1.313e-1325.44Uncharacterized transporter HI0608 OS=Haemophilus ... [more]
S13A4_HUMAN1.604e-1126.37Solute carrier family 13 member 4 OS=Homo sapiens ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-024-A09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729989 ID=EY729989; Name=EY729989; organism=Citrus sinensis; type=EST; length=793bp
CGAAGGCAAGCTGCACAAGTTCGACACCACCTCGACCACCTACTTCGGCC
TGGTCCTGCTGCTGCTGCCGCGCTTTGGCGTGATGACCTGGAAAGATGTG
CAGTCGCGCATCCCATGGGGCACCGTGATCGTGTTCGGCGTCGGCATCAG
CCTGGGCACCGCGTTGCTGACCACGCAGGCCGGCCAATGGCTGGGCAACC
AGGTGGTGGCACACACCGGCCTGGACCACCTCGGCCCGCTCGCCATCTTC
GCGATCCTGTCGGCCTTCCTGATCATCATCCACCTGGGGTTCGCCAGCGC
CACCGCGCTGACATCGGCGATGCTGCCGATCCTGATCTCGGTGCTGGCCA
CGCTGCCGGGCGACTTCAGCCGCCTGGGCATGACCATGCTGCTGGGCTTC
GTGGTGAGCTACGGCTTCATCCTGCCGATCAACGCGCCGCAGAACATGGT
TTGCCTGGGCACCGAGACCTTCAACGCCAAGCAGTTCGCCAAGGTCGGCA
TCCTGGTCACCATCATCGGCTACGCGCTGATGATGCTGATGGGCATGACC
TACTGGCGCTGGCTGGGCTGGCTGTAAGGAGGTCGCATCATGAAAATCTC
CATTGCCCAAGCCAATGAATACGGCCGCCGCGTGCTGATGGCGCAAGGCG
TGCCCGAAAATATCGCGCGCGACGTGGCCGANCACTGGTGGAGTCCGACG
GGGTCGGCTAAGCAGCCACGGGCTGTCAATCCTGACCACTACCACCCTTG
CGGGGGAAGGCTGGGGCAGGGCGACGGCGCCCNGACGGGTCGA
back to top