EY729979

Overview
NameEY729979
Unique NameEY729979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length790
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11890 contig Csv1_Contig11890:1..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: OHRR_BACSU (Organic hydroperoxide resistance transcriptional regulator OS=Bacillus subtilis GN=ohrR PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.754e-26
Identity = 57/101 (56.44%), Postives = 79/101 (78.22%), Query Frame = -1
Query:    2 LALDDQLCFKLYAASRAVTRAYKPMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 304
            + L++QLCF LYA+SR +T+ YKP+LD+L +TYPQYL +L+LWE +       TVK +GE+L LDSGTLTP+LKR+EQ  L+ R+RS +DER V +SLT++
Sbjct:    8 MKLENQLCFLLYASSREMTKQYKPLLDKLNITYPQYLALLLLWEHETL-----TVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTED 103          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.916e-18
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = -2
Query:  319 TNLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALLK 549
            TN GV+FP+F K+DVNG +AHPLFV L + A   L  + IKWNFTKF++ R+G++V R++P T P++L  +I  LL+
Sbjct:   83 TNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKGMLGTKAIKWNFTKFIVDRNGEIVGRYSPNTNPKELEDDIVKLLE 159          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.488e-17
Identity = 44/75 (58.67%), Postives = 58/75 (77.33%), Query Frame = -2
Query:  322 NLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 546
            N GV+F +F+KI VNG +AHPL+  LKK+A   L    IKWNFTKFLI RDGQV++RFAP T+P+++ +EI+ LL
Sbjct:   84 NYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKGALSGT-IKWNFTKFLIDRDGQVIERFAPKTEPEEMEEEIKKLL 157          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: GPO_LACLA (Glutathione peroxidase OS=Lactococcus lactis subsp. lactis GN=gpo PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.944e-17
Identity = 43/75 (57.33%), Postives = 58/75 (77.33%), Query Frame = -2
Query:  322 NLGVSFPLFKKIDVNGSDAHPLFVQLKKQAPVXLVPRGIKWNFTKFLIGRDGQVVKRFAPTTKPQDLTQEIEALL 546
            N GV+FP+F+KI VNG +AHPL+  LKK+A   L    IKWNFTKFLI R+G V++RFAP T+P+++ +EI+ LL
Sbjct:   84 NYGVTFPMFQKIKVNGKEAHPLYQFLKKEAKGALSGT-IKWNFTKFLIDREGNVIERFAPKTEPKEMEEEIQKLL 157          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: MGRA_STAAW (HTH-type transcriptional regulator mgrA OS=Staphylococcus aureus (strain MW2) GN=mgrA PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYK-PMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L +QLCF LY A R V R Y   +  +  LTYPQ+LV+ +LW+      S   VK +   L LD+GT++PLLKR+EQ+ L++R+RS  D+REV + LTD+
Sbjct:    7 LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWD-----ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: MGRA_STAAU (HTH-type transcriptional regulator mgrA OS=Staphylococcus aureus GN=mgrA PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYK-PMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L +QLCF LY A R V R Y   +  +  LTYPQ+LV+ +LW+      S   VK +   L LD+GT++PLLKR+EQ+ L++R+RS  D+REV + LTD+
Sbjct:    7 LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWD-----ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: MGRA_STAAS (HTH-type transcriptional regulator mgrA OS=Staphylococcus aureus (strain MSSA476) GN=mgrA PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYK-PMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L +QLCF LY A R V R Y   +  +  LTYPQ+LV+ +LW+      S   VK +   L LD+GT++PLLKR+EQ+ L++R+RS  D+REV + LTD+
Sbjct:    7 LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWD-----ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: MGRA_STAAR (HTH-type transcriptional regulator mgrA OS=Staphylococcus aureus (strain MRSA252) GN=mgrA PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYK-PMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L +QLCF LY A R V R Y   +  +  LTYPQ+LV+ +LW+      S   VK +   L LD+GT++PLLKR+EQ+ L++R+RS  D+REV + LTD+
Sbjct:    7 LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWD-----ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: MGRA_STAAN (HTH-type transcriptional regulator mgrA OS=Staphylococcus aureus (strain N315) GN=mgrA PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYK-PMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L +QLCF LY A R V R Y   +  +  LTYPQ+LV+ +LW+      S   VK +   L LD+GT++PLLKR+EQ+ L++R+RS  D+REV + LTD+
Sbjct:    7 LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWD-----ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 101          
BLAST of EY729979 vs. ExPASy Swiss-Prot
Match: MGRA_STAAM (HTH-type transcriptional regulator mgrA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=mgrA PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 4.330e-17
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = -1
Query:    2 LDDQLCFKLYAASRAVTRAYK-PMLDQLGLTYPQYLVMLVLWEWQAAAVSQPTVKALGERLMLDSGTLTPLLKRLEQLALVRRQRSAQDEREVHLSLTDE 298
            L +QLCF LY A R V R Y   +  +  LTYPQ+LV+ +LW+      S   VK +   L LD+GT++PLLKR+EQ+ L++R+RS  D+REV + LTD+
Sbjct:    7 LKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWD-----ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDK 101          
The following BLAST results are available for this feature:
BLAST of EY729979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
OHRR_BACSU1.754e-2656.44Organic hydroperoxide resistance transcriptional r... [more]
BSAA_BACSU3.916e-1851.95Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPO_LACLM1.488e-1758.67Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPO_LACLA1.944e-1757.33Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
MGRA_STAAW4.330e-1747.00HTH-type transcriptional regulator mgrA OS=Staphyl... [more]
MGRA_STAAU4.330e-1747.00HTH-type transcriptional regulator mgrA OS=Staphyl... [more]
MGRA_STAAS4.330e-1747.00HTH-type transcriptional regulator mgrA OS=Staphyl... [more]
MGRA_STAAR4.330e-1747.00HTH-type transcriptional regulator mgrA OS=Staphyl... [more]
MGRA_STAAN4.330e-1747.00HTH-type transcriptional regulator mgrA OS=Staphyl... [more]
MGRA_STAAM4.330e-1747.00HTH-type transcriptional regulator mgrA OS=Staphyl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-H08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729979 ID=EY729979; Name=EY729979; organism=Citrus sinensis; type=EST; length=790bp
CTTCATCGGTCAGGCTCAGGTGCACTTCACGCTCATCCTGCGCACTGCGC
TGACGCCGCACCAGAGCCAGCTGCTCCAGGCGCTTGAGCAGCGGCGTCAG
CGTGCCGGAATCCAGCATCAAGCGCTCGCCCAAGGCCTTGACCGTAGGCT
GCGATACCGCTGCAGCCTGCCATTCCCACAACACCAGCATCACCAGGTAT
TGCGGGTAGGTCAGCCCCAACTGATCGAGCATCGGCTTGTAGGCCCGGGT
AACCGCGCGGGAGGCGGCGTAGAGCTTGAAGCACAGTTGGTCGTCAAGCG
CCAAAGACAGGTCGGTCATTTGAGCAGGGCTTCAATCTCTTGGGTCAGGT
CCTGAGGCTTGGTGGTCGGGGCAAAACGCTTGACCACCTGGCCGTCGCGG
CCGATCAGGAACTTGGTGAAGTTCCACTTGATGCCCCTTGGAACCAGNNC
AACCGGGGCCTGCTTTTTAAGCTGTACGAACAATGGGTGAGCATCGCTGC
CATTGACGTCGATCTTCTTGAACAGCGGGAAACTGACACCCAAGTTAGTT
CGCAAAATCCCGAAATGGGGCCCTCTTGGCGGGGCCCTCTAAAAGATCAA
GCTTAGTTACGCTTCATTGCGAGTCTAACCCTCTAAATGGGCCCTAAATC
AATTCCTGGGCGTCTTTTTACACGTCTTGAATGGAAAAACCCGGGTTACC
AAATAATCGCCTGGAAGGAACCCCCTTTTCCAAGGGGGGTATATAAAAAG
GGCCCCCAGATCCCCCCCCCAAATGTGCCCCCCAATGGGA
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