EY729959

Overview
NameEY729959
Unique NameEY729959
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY729959 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.229e-34
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 1 
Query:  136 MATRASVAAS-LTSSLDTARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPSWFVS*QSLSYLDGSLPGDYGFDPLGHSDPEGTGGYIEP*WLASRQVSEGE*ALFGSWGSIAP 492
            MAT+A +++S +++S + ARQI+G+R +QS T   RK SFVVRAASTPPVKQGA+R  WF S QSLSYLDG LPGD+GFDPLG SDPEGTGG+IEP WLA  +V  G  A+ G+ G+IAP
Sbjct:    1 MATQALISSSSISTSAEAARQIIGSRISQSVT---RKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAP 117
[Close]
BLAST of EY729959 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.805e-33
Identity = 78/121 (64.46%), Postives = 90/121 (74.38%), Query Frame = 1 
Query:  136 MATRASVAAS-LTSSLDTARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGA-DRPSWFVS*QSLSYLDGSLPGDYGFDPLGHSDPEGTGGYIEP*WLASRQVSEGE*ALFGSWGSIAP 492
            MAT+A V++S LT + +  RQ   ARS  S  G SRKG  +VRAA+TPPVKQG  DRP WF S QSLSYLDGSLPGDYGFDPLG SDPEGTGG+IEP WLA  +V  G  A+ G+ G+IAP
Sbjct:    1 MATQALVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG--LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAP 119
The following BLAST results are available for this feature:
BLAST of EY729959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB13_SOLLC1.229e-3464.17Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA8.805e-3364.46Chlorophyll a-b binding protein 3, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-F03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729959 ID=EY729959; Name=EY729959; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGCCCACACGTCCGGCCCTTATTTTTCGGCCTTTGCTTATA
CTCCGAAACCAGAAACAGAAAGCCGAAGCACTTTGACTTTATCGGATGGA
GATAGAGAAACCACAGGAAAATAGAAAATCATAAAATGGCCACCCGAGCT
TCGGTTGCGGCATCTCTTACATCTTCATTGGATACTGCGAGACAAATACT
TGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAGGTTCCT
TTGTTGTTAGGGCAGCTTCTACTCCTCCTGTAAAGCAAGGAGCAGACAGA
CCGTCGTGGTTTGTATCCTAACAAAGCCTTTCATACTTGGATGGCAGCCT
CCCCGGAGACTATGGATTCGACCCACTTGGTCACTCAGACCCTGAAGGCA
CAGGAGGGTACATTGAGCCATAATGGCTGGCCTCGCGGCAGGTCAGCGAA
GGTGAATAAGCCTTGTTTGGGAGCTGGGGGAGCATTGCGCCGGGGAGTCA
GCAGGTCGGGTGTGAGGGGCGGGAGAGGCGCGGGCTTGGGTCTAGACGGA
GTGACCCCGCAGGGGGGCGGGGGGATGGCGGGCGGAACGGTTCTCGTGTT
GCTGGGTTGAAATGAGAGGGAGCGGTGGTGACGTGGGGTGGGAAGCGGGA
CTGGGCAGGAGTTGGTAGGGTGATGTGTGATTGGCGGCCCCCCGAGGGGG
GTGGGGGGCCGGGCGTGGCGTGGGGCGCGGAGGGGGGCGTGAGGATGGTC
GTCGGAGGGTGGCTACACGGGGCTGTGGCGGGAGGGAGGGGGGAGGGCGG
TCGCGGGCGTCTCATGGTCGCGGTGTGCTGAGGCTAGTGCTGAGCTTCGC
ACGGGCCTTGCCGATGCGGCGGTCGCTGCGGAG
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