EY729951

Overview
NameEY729951
Unique NameEY729951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_PSEAE (Flagellar M-ring protein OS=Pseudomonas aeruginosa GN=fliF PE=3 SV=2)

HSP 1 Score: 323.168 bits (827), Expect = 8.930e-88
Identity = 162/201 (80.60%), Postives = 183/201 (91.04%), Query Frame = -1
Query:    1 LKTSSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 603
            L   SEMTMLRQ+GL+VGLAASVAIGFAVVLWSQQPDY+PLYGSL G+D+ +++E L AADI Y VEPNSGALLVKADD+ RARMK+A+AGV P+D N+GFEILDK+Q LGTSQFMEAT YRRGLEGELART+S+LNNVK ARVHLAIPKSSVFVRD+RKPSASVLVEL+ GRSLEP QV+AI+NLVATSVPEL KSQ+TV
Sbjct:   30 LDNLSEMTMLRQIGLLVGLAASVAIGFAVVLWSQQPDYKPLYGSLNGVDANRVVEALTAADIPYKVEPNSGALLVKADDLGRARMKVASAGVAPTDNNVGFEILDKEQALGTSQFMEATNYRRGLEGELARTVSSLNNVKAARVHLAIPKSSVFVRDDRKPSASVLVELYPGRSLEPSQVMAIVNLVATSVPELDKSQVTV 230          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_ECOLI (Flagellar M-ring protein OS=Escherichia coli (strain K12) GN=fliF PE=1 SV=3)

HSP 1 Score: 163.696 bits (413), Expect = 9.055e-40
Identity = 88/209 (42.11%), Postives = 134/209 (64.11%), Query Frame = -1
Query:    1 AACRPCRSLKTSSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 627
            A     +SL+  + +    ++ L+V  +A+VA+  A++LW++ PDYR L+ +L+  D   I+  L   +I Y     SGA+ V AD V   R++LA  G+ P    +GFE+LD+++  G SQF E   Y+R LEGEL+RTI  +  VKGARVHLA+PK S+FVR+++ PSASV V L  GR+L+ GQ+ AI++LV+++V  L    +T+
Sbjct:    3 ATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAKAPDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL-PKGGAVGFELLDQEK-FGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPSLFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTL 209          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_SALTY (Flagellar M-ring protein OS=Salmonella typhimurium GN=fliF PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.001e-38
Identity = 87/190 (45.79%), Postives = 126/190 (66.32%), Query Frame = -1
Query:    1 QVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 570
            ++ L+V  +A+VAI  A+VLW++ PDYR L+ +L+  D   I+  L   +I Y     SGA+ V AD V   R++LA  G+ P    +GFE+LD+++  G SQF E   Y+R LEGELARTI  L  VK ARVHLA+PK S+FVR+++ PSASV V L  GR+L+ GQ+ A+++LV+++V  L    +T+
Sbjct:   25 RIPLIVAGSAAVAIVVAMVLWAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQQGL-PKGGAVGFELLDQEK-FGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMPKPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTL 212          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_BUCAI (Flagellar M-ring protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fliF PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 75/187 (40.11%), Postives = 118/187 (63.10%), Query Frame = -1
Query:    1 LMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 561
            L++ L A+     ++ +W + P+Y+ LY  L+  D   I+  L    I Y    + G +LV  D V   R++LA   + P   +IGFE+LDK++  G SQ+ E   Y R LEGELARTI  +N+VK AR+H+A  KSS+F++D++K SAS+++EL  GR+L  GQ+ AI++L+++S+ +L    IT+
Sbjct:   31 LIILLTAAAITAVSISVWIKSPEYQVLYNHLSNEDRGSIINELNEMKIPYQFTDSDGPILVPKDKVYEIRLRLAENNL-PRGGSIGFELLDKEK-FGISQYNEQINYHRALEGELARTIKKINSVKNARIHIAFSKSSLFLQDKKKSSASIILELQPGRNLNTGQINAIMHLISSSISDLPVENITI 215          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_BUCAP (Flagellar M-ring protein OS=Buchnera aphidicola subsp. Schizaphis graminum GN=fliF PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.119e-32
Identity = 74/187 (39.57%), Postives = 117/187 (62.57%), Query Frame = -1
Query:    1 LMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 561
            L++    +V    ++ +W + PDY+ LY +L+  D + I++ L    I Y +  +SG LLV  D V   R+  +       D  IG+EILDK++  G SQF E   Y+R LEGELARTI  +N VK A++H+A PK+S+F+ D++KPS SV++ L + + L+  QV AI++L+++S+ +LS   IT+
Sbjct:   31 LIILFVLAVITTVSISMWRKSPDYQVLYNNLSNEDGEMIIDQLNQMQIPYKLSEDSGQLLVPKDKVYELRLHFSENNSPHRD--IGYEILDKER-FGVSQFGEQINYQRALEGELARTIEKINVVKNAKIHIAFPKNSLFLEDKKKPSVSVILNLKSNQGLDHSQVNAILHLISSSICDLSIENITI 214          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_BUCBP (Flagellar M-ring protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=fliF PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.021e-27
Identity = 66/165 (40.00%), Postives = 101/165 (61.21%), Query Frame = -1
Query:    1 DYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 495
            +Y  LY +L+  D K I+  L +  I +    N   LL+ ++ + +  + LA  G+ P +  +GFE+LD ++  G SQF E   Y R LEGELAR+I  L N+K ARVH+ + KSSVF+R+++ PSASV++E+  GR L   Q+ +I+++VA  V  L    IT+
Sbjct:   51 NYSILYNNLSNDDEKSIVSRLISLKIPFKFNQNHSELLIPSNALKKVYLDLAEQGL-PKEKKVGFELLDTEK-FGLSQFNEEVNYERALEGELARSIQKLENIKTARVHIVLSKSSVFIREKKIPSASVILEIKPGRYLNYNQINSILHIVAQGVSNLQIENITI 213          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_AQUAE (Flagellar M-ring protein OS=Aquifex aeolicus GN=fliF PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.698e-26
Identity = 69/191 (36.13%), Postives = 110/191 (57.59%), Query Frame = -1
Query:    1 QVGLMVGLAASV-AIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 570
            Q  L VG+   + ++G   +++  Q +Y  LY  L+  D   ++  L    + Y + P+   + V  +     R+KLAA GV P    +G+E+ DK  G+  S+F +   ++R +EGELA+TI +L+ V+ ARVH+ +P+ S+F+R+E +  ASV ++L  G  L P QV AI NLV+ SV  L  SQ+ V
Sbjct:   22 QKALAVGIPLLLLSLGAVALIYLSQENYTVLYTGLSPDDLNAVVTELDKEGVKYKISPDGRTIYVPENVARELRLKLAAKGV-PRKGIVGYELFDKS-GIVLSRFQQLVNFKRAIEGELAKTIMSLDCVEFARVHIVLPEKSLFIREEEEAKASVFLKLKPGCELTPEQVKAIRNLVSGSVENLKPSQVVV 210          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_RHOSH (Flagellar M-ring protein OS=Rhodobacter sphaeroides GN=fliF PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 71/217 (32.72%), Postives = 121/217 (55.76%), Query Frame = -1
Query:    1 RPAAACRP-----CRSLKTSSEMTMLRQVGLMVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 636
            RPA+A  P        ++   +   LR+    + + A   +  A  +  ++P    LY  L   +  +++++L    IA  ++  +G + V   +  RARM LAA G+ P     G  +L  D  +GTS+ +E  R R+  E +LAR+I+ ++ V  ARVHLA+P+ S F+R+ + P ASV +++  GR+L+  QV AI+NLV++SVP +++  +TV
Sbjct:   12 RPASALIPQMRGMLDQIRRFGDQPGLRRAMPAILILAVTVLALAGWILLREPARVTLYPGLPEAEKARVIDSLTGGGIAAVIDERTGEVAVPGAEYHRARMLLAAQGL-PQGLPDGNALLS-DLPMGTSKSVETARLRQAQELDLARSITEISAVSAARVHLALPERSAFLRESQPPRASVFLQIVPGRTLDGAQVEAIVNLVSSSVPGMARQDVTV 226          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_BRUSU (Flagellar M-ring protein FliF OS=Brucella suis GN=fliF PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = -1
Query:    1 MVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 558
            +VG A   AI +  + +  +P Y  LY  L+  D  ++   L  A I + V+ +  ++LV       ARM LA  G+ P+  N G+E+ D    LG + FM+     R LEGE+ARTI A+  VK ARVH+ + +   F R ++KPSASV++    G S E  Q  +I  LVA +VP L  S +TV
Sbjct:   34 LVGAALMGAILYTSI-YLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGL-PTSNNAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQ--SIRQLVAAAVPSLDASSVTV 215          
BLAST of EY729951 vs. ExPASy Swiss-Prot
Match: FLIF_BRUME (Flagellar M-ring protein OS=Brucella melitensis GN=fliF PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.027e-23
Identity = 70/186 (37.63%), Postives = 101/186 (54.30%), Query Frame = -1
Query:    1 MVGLAASVAIGFAVVLWSQQPDYRPLYGSLAGMDSKQIMETLAAADIAYTVEPNSGALLVKADDVARARMKLAAAGVTPSDANIGFEILDKDQGLGTSQFMEATRYRRGLEGELARTISALNNVKGARVHLAIPKSSVFVRDERKPSASVLVELFAGRSLEPGQVLAIINLVATSVPELSKSQITV 558
            +VG A   AI +  + +  +P Y  LY  L+  D  ++   L  A I + V+ +  ++LV       ARM LA  G+ P+  N G+E+ D    LG + FM+     R LEGE+ARTI A+  VK ARVH+ + +   F R ++KPSASV++    G S E  Q  +I  LVA +VP L  S +TV
Sbjct:   34 LVGAALMGAILYTSI-YLGRPSYETLYVGLSRDDVNRMGLALGEAGIPFDVKSDGSSILVPIGKAENARMYLAEKGL-PTSNNAGYELFDNMGSLGLTSFMQEITRVRALEGEIARTIQAIRGVKAARVHIVLAEKGSFRRGDQKPSASVVIRAEGGFSAESAQ--SIRQLVAAAVPSLDASSVTV 215          
The following BLAST results are available for this feature:
BLAST of EY729951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
FLIF_PSEAE8.930e-8880.60Flagellar M-ring protein OS=Pseudomonas aeruginosa... [more]
FLIF_ECOLI9.055e-4042.11Flagellar M-ring protein OS=Escherichia coli (stra... [more]
FLIF_SALTY1.001e-3845.79Flagellar M-ring protein OS=Salmonella typhimurium... [more]
FLIF_BUCAI1.654e-3340.11Flagellar M-ring protein OS=Buchnera aphidicola su... [more]
FLIF_BUCAP3.119e-3239.57Flagellar M-ring protein OS=Buchnera aphidicola su... [more]
FLIF_BUCBP3.021e-2740.00Flagellar M-ring protein OS=Buchnera aphidicola su... [more]
FLIF_AQUAE5.698e-2636.13Flagellar M-ring protein OS=Aquifex aeolicus GN=fl... [more]
FLIF_RHOSH3.127e-2432.72Flagellar M-ring protein OS=Rhodobacter sphaeroide... [more]
FLIF_BRUSU2.027e-2337.63Flagellar M-ring protein FliF OS=Brucella suis GN=... [more]
FLIF_BRUME2.027e-2337.63Flagellar M-ring protein OS=Brucella melitensis GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-023-E07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729951 ID=EY729951; Name=EY729951; organism=Citrus sinensis; type=EST; length=720bp
CACGGTGATTTGCGACTTGCTCAATTCGGGAACGCTGGTGGCCACCAGGT
TGATGATCGCCAACACCTGGCCAGGCTCCAGGGAGCGGCCAGCAAACAAT
TCGACCAGTACCGAAGCGCTGGGCTTGCGTTCATCGCGCACAAACACCGA
GCTTTTCGGAATCGCCAGGTGCACGCGGGCGCCCTTGACGTTGTTCAACG
CGGAAATGGTGCGCGCCAGTTCGCCTTCCAGGCCACGACGGTAGCGGGTG
GCTTCCATGAACTGGCTGGTACCCAGGCCCTGGTCCTTGTCGAGGATTTC
AAAGCCGATATTGGCGTCGGACGGGGTGACGCCGGCTGCCGCCAGTTTCA
TCCGTGCACGGGCCACATCATCGGCCTTGACCAACAGGGCGCCGGAATTC
GGTTCGACGGTGTAGGCGATGTCTGCCGCCGCCAGGGTTTCCATGATCTG
CTTGGAATCCATGCCCGCCAGGCTGCCGTACAGCGGGCGGTAATCCGGTT
GCTGGGACCACAGCACCACGGCAAAACCAATCGCCACGCTGGCAGCCAGG
CCGACCATCAGGCCCACCTGACGCAGCATGGTCATCTCGGANGAGGTTTT
CAGTGAACGACAGGGCCGACAGGCGGCGGCTGGCCGGCTGCCTTGGCGGG
TTCNTTGGCCGCGACTGGTTCTGCCATGAGCTCGAATGCTCCTGAGACGG
GCATCGGCATGACAGTCTGA
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