EY729808

Overview
NameEY729808
Unique NameEY729808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length367
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY729808 vs. ExPASy Swiss-Prot
Match: KDPD_ECOLI (Sensor protein kdpD OS=Escherichia coli (strain K12) GN=kdpD PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 50/97 (51.55%), Postives = 60/97 (61.86%), Query Frame = -1
Query:    2 DALLPDLPRDGRGRLKVFXGAAPGVGKTYAMLQXAHTQLRQGVRLIAGVVETHGRAETEALLSGLPQQPLLRSEYRGVMLEEMDLDGLLAAKPKLVL 292
            D LL       RG+LKVF GA  GVGKT+AML  A     QG+ ++ GVVETHGR +T A+L GL   PL R  YRG  + E DLD  LA +P L+L
Sbjct:   11 DRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAEAQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVLPLKRQAYRGRHISEFDLDAALARRPALIL 107          
BLAST of EY729808 vs. ExPASy Swiss-Prot
Match: KDPD_MYCTU (Sensor protein kdpD OS=Mycobacterium tuberculosis GN=kdpD PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.809e-18
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = -1
Query:    2 RGRLKVFXGAAPGVGKTYAMLQXAHTQLRQGVRLIAGVVETHGRAETEALLSGLPQQPLLRSEYRGVMLEEMDLDGLLAAKPKLVL 259
            RG+L+++ GAAPGVGKTYAML  AH +L +G  ++A VVETHGR +T  LL G+   P    EYRG    E+D++ +L   P++VL
Sbjct:   26 RGQLRIYLGAAPGVGKTYAMLGEAHRRLERGTDVVAAVVETHGRNKTAKLLEGIEMIPPRYVEYRGARFPELDVEAVLRRHPQVVL 111          
BLAST of EY729808 vs. ExPASy Swiss-Prot
Match: KDPD_CLOAB (Sensor protein kdpD OS=Clostridium acetobutylicum GN=kdpD PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.828e-17
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = -1
Query:    2 RGRLKVFXGAAPGVGKTYAMLQXAHTQLRQGVRLIAGVVETHGRAETEALLSGLPQQPLLRSEYRGVMLEEMDLDGLLAAKPKLVL 259
            RG+LK+F G A GVGKTYAML+ AH     G  ++ G +E H R +T +L  GLPQ P+   +Y+GV+L E D+D  L  KP+++L
Sbjct:   26 RGKLKIFFGYAAGVGKTYAMLRAAHYMKELGKDIVIGYIEPHARMDTMSLTKGLPQIPVKNIDYKGVILREFDVDKALLRKPEIIL 111          
BLAST of EY729808 vs. ExPASy Swiss-Prot
Match: KDPD_SYNY3 (Putative sensor protein kdpD OS=Synechocystis sp. (strain PCC 6803) GN=kdpD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.500e-15
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = -1
Query:    2 MSDSGRADALLPDL-PRDGRGRLKVFXGAAPGVGKTYAMLQXAHTQLRQGVRLIAGVVETHGRAETEALLSGLPQQPLLRSEYRGVMLEEMDLDGLLAAKPKLVL 313
            M  +G++ +L P   P   RG+ K+F G APGVGKTY ML+      ++G  ++ G++ETHGR ET     GL Q PL    ++G  L EMD   +LA  P+L L
Sbjct:    1 MIHAGQSSSLTPAASPPHRRGKHKIFIGMAPGVGKTYRMLEEGQQLKQEGFDVVIGLLETHGREETAQKAIGLEQVPLRTMIWQGRSLLEMDTGAILARSPQLAL 105          
BLAST of EY729808 vs. ExPASy Swiss-Prot
Match: KDPD_RATRA (Sensor protein kdpD OS=Rathayibacter rathayi GN=kdpD PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.038e-12
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = -1
Query:    2 KVFXGAAPGVGKTYAMLQXAHTQLRQGVRLIAGVVETHGRAETEALLSGLPQQPLLRSEYRGVMLEEMDLDGLLAAK-PKLVL 247
            +V  GA  GVGKT+ ML+ A     +GV ++  VVETHGRA T A L GL   P L  E+RGV+L EMD+ G++  + P+L L
Sbjct:    6 RVLLGAPRGVGKTFTMLEEAKPLRDEGVDVVVAVVETHGRAGTAAALVGLEVVPRLTVEHRGVVLTEMDVAGVIVRRAPQLAL 88          
The following BLAST results are available for this feature:
BLAST of EY729808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KDPD_ECOLI1.145e-1951.55Sensor protein kdpD OS=Escherichia coli (strain K1... [more]
KDPD_MYCTU4.809e-1850.00Sensor protein kdpD OS=Mycobacterium tuberculosis ... [more]
KDPD_CLOAB1.828e-1747.67Sensor protein kdpD OS=Clostridium acetobutylicum ... [more]
KDPD_SYNY36.500e-1541.90Putative sensor protein kdpD OS=Synechocystis sp. ... [more]
KDPD_RATRA1.038e-1248.19Sensor protein kdpD OS=Rathayibacter rathayi GN=kd... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-021-F04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY729808 ID=EY729808; Name=EY729808; organism=Citrus sinensis; type=EST; length=367bp
CCAGCACCAGTTTGGGCTTGGCGGCGAGCAGGCCGTCGAGGTCCATTTCC
TCCAGCATCACACCGCGGTATTCGGAGCGCAGCAGCGGCTGTTGTGGCAG
GCCGCTGAGCAAGGCTTCGGTCTCGGCGCGGCCGTGGGTTTCCACCACGC
CGGCGATCAGCCGCACGCCCTGGCGCAGCTGGGTGTGAGCGGNCTGNAGC
ATGGCGTAGGTCTTGCCCACGCCGGGCGCGGCGCCGANGAAGACTTTGAG
CCGGCCACGGCCGTCCCGGGGTAGATCGGGTAACAGGGCATCNGCGCGGC
CGGAGTCGCTCATGCGGGCGGTCTTCCTTCAGGTGTTGATGTGGTGATAG
TGATGCCGCNATCCGGG
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