EY728919

Overview
NameEY728919
Unique NameEY728919
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length244
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11706 contig Csv1_Contig11706:31..274. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728919 vs. ExPASy Swiss-Prot
Match: RFAF_HAEIN (ADP-heptose--LPS heptosyltransferase 2 OS=Haemophilus influenzae GN=rfaF PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.214e-22
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = -2
Query:    1 MNILIVGPSWVGDMVMAQTLFQCLKQRHPDCQIDVLAPEWSRPILERMPEVRQALSFPLGHGALELAT 204
            MNILI+GPSWVGDM+M+ +L+Q LK ++P+C IDV+AP W +P+L RMPEVR+A+  PLGHGA EL T
Sbjct:    1 MNILIIGPSWVGDMMMSHSLYQQLKIQYPNCNIDVMAPNWCKPLLARMPEVRKAIEMPLGHGAFELGT 68          
BLAST of EY728919 vs. ExPASy Swiss-Prot
Match: RFAF_SALTY (ADP-heptose--LPS heptosyltransferase 2 OS=Salmonella typhimurium GN=rfaF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.020e-20
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    7 MNILIVGPSWVGDMVMAQTLFQCLKQRHPDCQIDVLAPEWSRPILERMPEVRQALSFPLGHGALEL 204
            M IL++GPSWVGDM+M+Q+L++ LK R+P   IDV+AP W RP+L RMPEV +A+  PLGHGALE+
Sbjct:    1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEI 66          
BLAST of EY728919 vs. ExPASy Swiss-Prot
Match: RFAF_ECOLI (ADP-heptose--LPS heptosyltransferase 2 OS=Escherichia coli (strain K12) GN=rfaF PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.786e-20
Identity = 40/66 (60.61%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    7 MNILIVGPSWVGDMVMAQTLFQCLKQRHPDCQIDVLAPEWSRPILERMPEVRQALSFPLGHGALEL 204
            M IL++GPSWVGDM+M+Q+L++ L+ R+P   IDV+AP W RP+L RMPEV +A+  PLGHGALE+
Sbjct:    1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEI 66          
The following BLAST results are available for this feature:
BLAST of EY728919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RFAF_HAEIN4.214e-2264.71ADP-heptose--LPS heptosyltransferase 2 OS=Haemophi... [more]
RFAF_SALTY3.020e-2062.12ADP-heptose--LPS heptosyltransferase 2 OS=Salmonel... [more]
RFAF_ECOLI8.786e-2060.61ADP-heptose--LPS heptosyltransferase 2 OS=Escheric... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-D02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728919 ID=EY728919; Name=EY728919; organism=Citrus sinensis; type=EST; length=244bp
GGTCGCCAGTTCCAGCGCGCCATGGCCGAGCGGGAAGCTCAAAGCCTGAC
GCACCTCGGGCATACGCTCAAGAATCGGCCGGCTCCACTCGGGGGCGAGC
ACGTCGATTTGGCAGTCGGGATGGCGTTGTTTCAGGCACTGGAACAGTGT
CTGTGCCATCACCATGTCACCGACCCAACTGGGCCCAACGATCAGAATAT
TCATGTAGTTTCCACAAACGATACGGGGGGAGGGCNNNNNNNCC
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