EY728907

Overview
NameEY728907
Unique NameEY728907
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: PAAE_ECOLI (Probable phenylacetic acid degradation NADH oxidoreductase paaE OS=Escherichia coli (strain K12) GN=paaE PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 6.837e-49
Identity = 80/146 (54.79%), Postives = 104/146 (71.23%), Query Frame = -3
Query:    1 GQHLVMRTQLDGEEVRRSYSICTGVNDGELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHFHVDLDPARHGHYLAVAAGSGITPILSIIKTTLQTEPHSRVTLLYGNRSSSGALFREQLEDLKNRYLQRLNLIFVFSREQQD 438
            GQHL ++   DGEE+RR YSIC     GE+ +A+K + GGRFS +A E ++ G +LEVM P GHF       R G YLA+AAGSGITP+L+II TTLQTEP S+ TL+YGNR+S   +FR+ L DLK++Y QRL L+ +FS+E  D
Sbjct:   39 GQHLTLKASFDGEELRRCYSICRSYLPGEISVAVKAIEGGRFSRYAREHIRQGMTLEVMVPQGHFGYQPQAERQGRYLAIAAGSGITPMLAIIATTLQTEPESQFTLIYGNRTSQSMMFRQALADLKDKYPQRLQLLCIFSQETLD 184          

HSP 2 Score: 47.3654 bits (111), Expect = 6.837e-49
Identity = 20/36 (55.56%), Postives = 28/36 (77.78%), Query Frame = -2
Query:  446 MSKFHSLTIKDVRNETRDAVSIAFEIPQHLQDSFHF 553
            M+ FHSLT+  V +ETRDAV+I F +PQ LQ+++ F
Sbjct:    1 MTTFHSLTVAKVESETRDAVTITFAVPQPLQEAYRF 36          
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: HMP_PSEAE (Flavohemoprotein OS=Pseudomonas aeruginosa GN=hmp PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.652e-15
Identity = 48/134 (35.82%), Postives = 79/134 (58.96%), Query Frame = -3
Query:   43 GQHLVMRTQLDGEEVRRSYSICTGVNDGELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHFHV-DLDPARHGHYLAVAAGSGITPILSIIKTTLQTEPHSR-VTLLYGNRSSSGALFREQLEDLKNRYLQ 438
            GQ++ +R  +DGEEVRR+YS+    N  E RI++KR AGGR S + ++++  G  L++ PPAG F + D D       + + AG GITP L++++  L   P +R +  ++  R      FR+ +ED+  ++ Q
Sbjct:  189 GQYIGLRLDIDGEEVRRNYSLSAASNGREYRISVKREAGGRVSNYLHDRVAEGDELDLFPPAGDFVLRDSDKP----LVLITAGVGITPALAMLQEAL---PQARPIRFIHCARHGGVHAFRDWIEDVSAQHEQ 315          
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: HMP_PSEPK (Flavohemoprotein OS=Pseudomonas putida (strain KT2440) GN=hmp PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.148e-14
Identity = 44/132 (33.33%), Postives = 78/132 (59.09%), Query Frame = -3
Query:   43 GQHLVMRTQLDGEEVRRSYSICTGVNDGELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHFHVDLDPARHGHYLAVAAGSGITPILSIIKTTLQTEPHSRVTLLYGNRSSSGALFREQLEDLKNRYLQ 438
            GQ++ ++  +DG E RR+YS+    +  E RI++KR AGG+ S + +++LK G +L++ PPAG F +    A     + ++ G GITP L++++  LQT     V  ++  R+ +   FR+ ++ L  R+ Q
Sbjct:  189 GQYIGLKLDIDGAEQRRNYSLSALCDGKEYRISVKREAGGKVSNYLHDELKVGDTLQLFPPAGDFTL---AASDKPLVLISGGVGITPTLAMLQAALQT--RREVHFIHCARNGAVHAFRDWIDGLAARHPQ 315          
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: HMP_BURST (Flavohemoprotein OS=Burkholderia sp. (strain TH2) GN=hmp PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.066e-13
Identity = 41/146 (28.08%), Postives = 82/146 (56.16%), Query Frame = -3
Query:    1 GQHLVMRTQLDGEEVRRSYSICTGVNDGELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHFHVDLDPARHGHYLAVAAGSGITPILSIIKTTLQTEPHSRVTLLYGNRSSSGALFREQLEDLKNRYLQRLNLIFVFSREQQD 438
            GQ++ ++  +DGEE+RR+YS+    N  E RI++KR   G+ S + ++ +  G +L+++ P+G F ++ +       + ++ G GITP L+++   LQT     +  ++  R      FR+ +++L  R+ Q L   +V+ + + D
Sbjct:  189 GQYIGLKLIVDGEEIRRNYSLSAAANGREYRISVKREPNGKASNYLHDSVNEGATLDLLTPSGDFTLEHNDK---PLVLISGGVGITPTLAMLNAALQTS--RPIHFIHATRHGGVHAFRDHIDELAARHPQ-LKRFYVYEKPRHD 328          
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: FHP_SCHPO (Flavohemoprotein OS=Schizosaccharomyces pombe GN=SPAC869.02c PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.626e-12
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = -3
Query:   10 VSISTQGQHLVMRTQLDG--EEVRRSYSICTGVND--GELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHF-HVDLDPARHGHYLAVAAGSGITPILSIIKTTLQTEPHSRVTLLYGNRSSSGALFREQLEDLKNRYLQRLNLIFVFSRE 456
            +S +  GQ++ +  ++ G   +  R YS+   V+    + RI+++RVAGG  S F ++ LK G  + V PPAG+F +   +   +   L  A G GITP++ II+T L      +V   Y +R+     F++ LE LK +Y + L L   FS E
Sbjct:  208 ISHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRVAGGVVSNFVHDNLKVGDIVGVSPPAGNFVYKRSEENVNRPLLCFAGGIGITPLIPIIETALL--DGRKVNFCYSSRNYVSRPFKQWLEQLKLKYKENLKLKEFFSEE 359          
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: NCB5R_LACBS (NADH-cytochrome b5 reductase 1 OS=Laccaria bicolor (strain S238N-H82) GN=MCR1.1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.977e-12
Identity = 44/143 (30.77%), Postives = 70/143 (48.95%), Query Frame = -3
Query:   16 GQHLVMRTQLDGEEVRRSYSICTGVND-GELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHFHVDLDPARHGHYLAVAAGSGITPILSIIKTTLQTEP-HSRVTLLYGNRSSSGALFREQLEDLKNRYLQRLNLIFVFS 438
            GQH+ +   ++G+ + RSY+  +  N  G   + IK    G  S      LK G +L V  P G+F     P    H   +A G+G+ P++ I++  LQ  P  + +TL+Y N +    L R +L+ L   Y  R NL +V +
Sbjct:  100 GQHISVSADINGKNIVRSYTPISRQNARGRFELIIKTYEKGNISRHV-ASLKIGDTLRVKGPKGNFKYT--PGLTAHLGMIAGGTGLAPMIQIVRAILQNPPDRTNITLIYANVNEEDILLRAELDALAMGYESRFNLFYVLN 239          
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: HMP_VIBPA (Flavohemoprotein OS=Vibrio parahaemolyticus GN=hmp PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.903e-11
Identity = 39/129 (30.23%), Postives = 76/129 (58.91%), Query Frame = -3
Query:   61 GQHL---VMRTQLDGEEVRRSYSICTGVNDGELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHFHVDLDPARHGHYLAVAAGSGITPILSIIKTTLQTEPHSRVTLLYGNRSSSGALFREQLEDL 438
            GQ+L   +   + + +E+R+ YS+ + V +   RI++KR  GG+ S + +++L  G  +++  PAG F +D+D   +   + ++AG G+TP LS++++   TE H+ VT ++   +S    F+E +  L
Sbjct:  186 GQYLGIYINSDKFENQEIRQ-YSLSSSVQENTYRISVKREQGGKVSNYLHDELNIGDKVKLAAPAGDFFMDVD--TNTPVVLISAGVGLTPTLSMLESL--TEHHAPVTWVHATENSKHHAFKEHVNQL 309          
BLAST of EY728907 vs. ExPASy Swiss-Prot
Match: NCB5R_CANGA (NADH-cytochrome b5 reductase 1 OS=Candida glabrata GN=CBR1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.791e-11
Identity = 43/150 (28.67%), Postives = 77/150 (51.33%), Query Frame = -3
Query:    1 GQHLVMRTQLDGEEVRRSYSICTGVND---GELRIAIKRVAGGRFSAFANEQLKAGHSLEVMPPAGHFHVDLDPARHGHYLAVAAGSGITPILSIIKTTLQT-EPHSRVTLLYGNRSSSGALFREQLEDLKNRYLQRLNLIFVFSREQQD 438
            GQH+ ++T + G+ V RSY+  T +++   G   + +K    G  S    + +K G  + +  P G +  +  P  H H   VA G+GITP+  I+K   +     +RVTLLYGN      L +++L+DL  +   +  + ++  + ++D
Sbjct:   76 GQHITVKTIIGGKPVSRSYTP-TSLDEECVGFFELLVKSYPEGNISKHIGD-MKIGEKINISGPRGFY--EYVPNVHKHLAMVAGGTGITPMFQIMKAIARDPSDKTRVTLLYGNVLEEDILLKQELDDLVKQRPDQFKITYLLDKPERD 221          
The following BLAST results are available for this feature:
BLAST of EY728907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PAAE_ECOLI6.837e-4954.79Probable phenylacetic acid degradation NADH oxidor... [more]
HMP_PSEAE5.652e-1535.82Flavohemoprotein OS=Pseudomonas aeruginosa GN=hmp ... [more]
HMP_PSEPK2.148e-1433.33Flavohemoprotein OS=Pseudomonas putida (strain KT2... [more]
HMP_BURST1.066e-1328.08Flavohemoprotein OS=Burkholderia sp. (strain TH2) ... [more]
FHP_SCHPO2.626e-1233.12Flavohemoprotein OS=Schizosaccharomyces pombe GN=S... [more]
NCB5R_LACBS9.977e-1230.77NADH-cytochrome b5 reductase 1 OS=Laccaria bicolor... [more]
HMP_VIBPA2.903e-1130.23Flavohemoprotein OS=Vibrio parahaemolyticus GN=hmp... [more]
NCB5R_CANGA3.791e-1128.67NADH-cytochrome b5 reductase 1 OS=Candida glabrata... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-B09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728907 ID=EY728907; Name=EY728907; organism=Citrus sinensis; type=EST; length=701bp
ATCCTGCTGCTCGCGGCTGAACACGAAGATCAGGTTCAGGCGCTGCAGGT
AGCGGTTCTTCAGGTCTTCCAGCTGTTCGCGAAACAGTGCACCGGAGCTG
GAGCGGTTGCCGTACAGCAGCGTCACGCGGCTGTGGGGCTCGGTTTGCAG
GGTGGTCTTGATGATCGACAGGATCGGTGTGATTCCGCTGCCGGCCGCCA
CTGCCAGGTAATGGCCGTGGCGAGCCGGATCAAGGTCTACATGGAAATGC
CCGGCGGGTGGCATCACTTCCAGGCTGTGCCCGGCCTTGAGCTGCTCATT
GGCAAACGCGGAGAACCGCCCACCGGCCACGCGCTTGATGGCGATGCGCA
GTTCACCGTCATTGACCCCGGTGCAGATCGAATAGGAGCGACGCACTTCC
TCGCCGTCCAGCTGGGTGCGCATCACCAGGTGCTGGCCCTGGGTGGAAAT
GGAAACTGTCTTGCAGATGCTGCGGAATCTCGAAGGCGATGGACACCGCA
TCACGGGTCTCGTTGCGCACATCCTTGATGGTCAGGCTATGGAATTTGCT
CATTGTTGTTCTCCAACCAAGCGGGCCGCCGGCCCCTCANATGCACTTGA
AATAGTCGAACGGTTCGAGGCAGTCGCGGCAGCGGTGCANCGCCTTGCAG
GCGTGGAGCCAATCNTGAGCCTTCGTTGAGACGCCTGCGGTAAACGTTCA
G
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