EY728902

Overview
NameEY728902
Unique NameEY728902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length349
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8524 contig Csv1_Contig8524:51..399. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728902 vs. ExPASy Swiss-Prot
Match: RECJ_SALTY (Single-stranded-DNA-specific exonuclease recJ OS=Salmonella typhimurium GN=recJ PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.693e-20
Identity = 44/79 (55.70%), Postives = 62/79 (78.48%), Query Frame = -3
Query:    9 ELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTLGLRLLG 245
            +LPPLL RLYA+RGV+S  EL++S+  ++P+QQL GID AV++L  A  +  RI++VGDFDADGAT++ +  LG+R LG
Sbjct:   21 DLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALG 99          
BLAST of EY728902 vs. ExPASy Swiss-Prot
Match: RECJ_ECOLI (Single-stranded-DNA-specific exonuclease recJ OS=Escherichia coli (strain K12) GN=recJ PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.635e-19
Identity = 42/81 (51.85%), Postives = 62/81 (76.54%), Query Frame = -3
Query:    3 ELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAA 245
            ELPPLL RLYA+RGV+S  EL++S+  ++P+QQL G++ AV++L  A  +  RI++VGDFDADGAT++ +  L +R LG +
Sbjct:   21 ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCS 101          
BLAST of EY728902 vs. ExPASy Swiss-Prot
Match: RECJ_HAEIN (Single-stranded-DNA-specific exonuclease recJ OS=Haemophilus influenzae GN=recJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.216e-15
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = -3
Query:    9 PLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTLGLRLLG 236
            PLL RLY AR +Q+  ELD++L  ++   QL GI+ AV+LLV A + +Q+I+IVGDFDADGAT++ +  L LR LG
Sbjct:   20 PLLDRLYRARHIQNTKELDRTLKSMLNPNQLYGIEQAVNLLVEAYQPQQKIVIVGDFDADGATSTALSVLALRQLG 95          
BLAST of EY728902 vs. ExPASy Swiss-Prot
Match: RECJ_DICD3 (Single-stranded-DNA-specific exonuclease recJ OS=Dickeya dadantii (strain 3937) GN=recJ PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.309e-14
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = -3
Query:    6 LPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDADGATASTVGTLGLRLLGA 242
            LP LL RLYA RGV+   EL++SL  L+ Y+ L GI  AV++L  AL   +RI+IVGDFDAD AT++ +  L LR + A
Sbjct:   21 LPALLRRLYAQRGVRQMQELERSLRGLLDYRLLGGITQAVEVLRQALADNRRIVIVGDFDADRATSTALTVLALRSMAA 99          
The following BLAST results are available for this feature:
BLAST of EY728902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RECJ_SALTY8.693e-2055.70Single-stranded-DNA-specific exonuclease recJ OS=S... [more]
RECJ_ECOLI5.635e-1951.85Single-stranded-DNA-specific exonuclease recJ OS=E... [more]
RECJ_HAEIN2.216e-1553.95Single-stranded-DNA-specific exonuclease recJ OS=H... [more]
RECJ_DICD39.309e-1451.90Single-stranded-DNA-specific exonuclease recJ OS=D... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-B03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728902 ID=EY728902; Name=EY728902; organism=Citrus sinensis; type=EST; length=349bp
TGGGCGGCACCCAACAAACGCAGGCCCAGGGTGCCCACGGTGCTGGCGGT
GGCGCCATCGGCGTCGAAGTCACCCACGATCAGTATCCGCTGGCGCTGTT
CCAGAGCCGTCACCAGCAGGTCCACGGCGGCATCGATGCCCTTGAGCTGC
TGATACGGAATCAGCCGGGCCAGGCTTTTATCCAGCTCGGCTTCCGATTG
CACCCCGCGTGCGGCGTAGAGACGGGTCAACAACGGTGGCAATTCACCGA
GGAATGGCAGGACGGCGGGCAACGGGCGAGGATCGATACGCATGGGGTGA
CGGAAGCTTCTCTTTAATGTTGAAAATTAGCGGTGATCCTGGNTTAGGA
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