EY728893

Overview
NameEY728893
Unique NameEY728893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: OPDE_PSEAE (Transcription regulatory protein opdE OS=Pseudomonas aeruginosa GN=opdE PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.358e-19
Identity = 59/200 (29.50%), Postives = 90/200 (45.00%), Query Frame = -2
Query:    7 WMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAI----RISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 594
            W+  L+GWR  FL    V +  L  Q   LP +           +  + A    P   +G++A  L  +  F+ +TYV PF +  +G  G  +  +LL+ G AG +G         R    TL+ +PL++     +        +  V+L+ LWG      P     W+  V P+D E G  LFVA+ Q+ IA+GS  GG
Sbjct:  166 WLGTLIGWRGAFLCLVPVALVALAWQWTTLPSMRAGARAPGPGNVFTVFALLKRPGVMLGMLASSLFFMGQFSLFTYVRPFLETVTGVHGAHVSLVLLVIGAAGFIGTLLIDRVLQRRFFQTLVAIPLLMALIALVLTVLGGWPAIVVVLLGLWGLTGTSAPVGWWAWIARVFPEDAEAGGGLFVAVVQLSIALGSTLGG 365          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALPB (Purine ribonucleoside efflux pump nepI OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nepI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.388e-17
Identity = 49/197 (24.87%), Postives = 94/197 (47.72%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +   ++  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAVIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALG2 (Purine ribonucleoside efflux pump nepI OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nepI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.388e-17
Identity = 49/197 (24.87%), Postives = 94/197 (47.72%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +   ++  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAVIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALEP (Purine ribonucleoside efflux pump nepI OS=Salmonella enteritidis PT4 (strain P125109) GN=nepI PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.388e-17
Identity = 49/197 (24.87%), Postives = 94/197 (47.72%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +   ++  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAVIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALTY (Purine ribonucleoside efflux pump nepI OS=Salmonella typhimurium GN=nepI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 49/197 (24.87%), Postives = 93/197 (47.21%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +    +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALTI (Purine ribonucleoside efflux pump nepI OS=Salmonella typhi GN=nepI PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 49/197 (24.87%), Postives = 93/197 (47.21%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +    +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALPK (Purine ribonucleoside efflux pump nepI OS=Salmonella paratyphi A (strain AKU_12601) GN=nepI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 49/197 (24.87%), Postives = 93/197 (47.21%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +    +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALPC (Purine ribonucleoside efflux pump nepI OS=Salmonella paratyphi C (strain RKS4594) GN=nepI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 49/197 (24.87%), Postives = 93/197 (47.21%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +    +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALPA (Purine ribonucleoside efflux pump nepI OS=Salmonella paratyphi A GN=nepI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 49/197 (24.87%), Postives = 93/197 (47.21%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +    +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
BLAST of EY728893 vs. ExPASy Swiss-Prot
Match: NEPI_SALCH (Purine ribonucleoside efflux pump nepI OS=Salmonella choleraesuis GN=nepI PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.367e-17
Identity = 49/197 (24.87%), Postives = 93/197 (47.21%), Query Frame = -2
Query:    7 NWMSALMGWRTTFLVTALVGIPVLLAQMFLLPRLEPEKAIRISDLPAXFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGLMGNFFAGFAANRSVRHTLLLVPLMIGTSTALFPYFATGMSGPVMLIALWGFPFGPFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGG 597
            +++  ++GWR  F   A++G+  ++  +  LP L  E + +  ++ +    P    G+IA+ +     FA +TY+ P + N +GFD   +  +LL +G+A  +G  F+ +   RSV+  L   PL++  S      + +  +    +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG
Sbjct:  165 SFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVLKRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAVGG 361          
The following BLAST results are available for this feature:
BLAST of EY728893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
OPDE_PSEAE7.358e-1929.50Transcription regulatory protein opdE OS=Pseudomon... [more]
NEPI_SALPB1.388e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALG21.388e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALEP1.388e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALTY2.367e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALTI2.367e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALPK2.367e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALPC2.367e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALPA2.367e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]
NEPI_SALCH2.367e-1724.87Purine ribonucleoside efflux pump nepI OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-010-A01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728893 ID=EY728893; Name=EY728893; organism=Citrus sinensis; type=EST; length=892bp
AATCTGCCCGCCAAAGAACGAGCCCACGGCAATGATCACCTGGAACAACG
CGACGAACAGCGGCATGCCACGTTCCACATCCTTGGGCGCCACCACAAAC
ATCCAGATACTCGCGCAGGCCGGGAAGGGGCCGAAGGGGAAGCCCCACAG
TGCGATCAGCATCACGGGGCCGCTCATGCCGGTGGCGAAATAAGGGAACA
GGGCAGTGCTGGTGCCGATCATCAGGGGCACCAACAACAAGGTGTGGCGC
ACGCTGCGGTTGGCGGCGAAACCGGCGAAAAAGTTGCCCATTAAGCCGGC
CACGCCGTATAACAGCAGCAGCGAGCCAATGGTCGGGCCGTCGAAACCGG
AGCTGTTTTTGAAGAACGGGGCGACATATGTGTATGCGGCAAAATGCGCG
AGGCCGATCAGCAGCACGGCGATCAAGCCGACCCGGGCTTGTGGGTTGAT
GAACANGGCCGGCAGGTCGCTGATGCGGATGGCTTTTTCCGGTTCGAGGC
GCGGCAGCAGGAACATCTGCGCCAGCAGTACCGGGATGCCCACCAGCGCG
GTGACGAGGAAGGTCGTGCGCCACCCCATCAGGGCGCTCATCCAGTTGCC
GAGGGGTACGCCGAGGAGGGGTGGCAGGGTCCCGCCCACCATGAAGATCA
AGGTGCGCTTGCTGAGGCCACTCGCTTGGGGGCCAGACGGGGGCCCTAGA
AGGTCCCAGTGTACGTACTCCGGGTTGCACGGCCTGAGGTTTGTGTGGCG
TGCCCTCAGTTCGATTTGCGGGCGCTGGTGTGACGTCTGCTGGAGCGGGG
AAAGCGCGGAGGGGCGCCGCGGTGGAGCGTGCGCGCAGGCCCGGCTGCGC
GGGGAGGGGAAGTGAAGGCGGCTCCCAAGGGGGCTGGGATCG
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