EY728892

Overview
NameEY728892
Unique NameEY728892
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPD2_ARATH (Spermidine synthase 2 OS=Arabidopsis thaliana GN=SPDSYN2 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 4.074e-17
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 1
Query:  337 MAETGSAAATDFPLKRPRDDGDKEASNNNNGSVLMEMDSN----KQPDCISSVIPGWFSDISPMWPG 525
            M+ T  A+ TD P+KRPR     EA  +NNG   ME ++     K+P C+SS+IPGWFS+ISPMWPG
Sbjct:    1 MSSTQEASVTDLPVKRPR-----EAEEDNNGGA-METENGGGEIKEPSCMSSIIPGWFSEISPMWPG 61          

HSP 2 Score: 38.891 bits (89), Expect = 4.074e-17
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD+++V V  S+      ++DG
Sbjct:   60 PGEAHSLKVEKILFQGKSDYQDVIVFQSATYGKVLVLDG 98          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 4.823e-14
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:  358 AATDFPLKRPRDDGDKEASNNNNGSVLMEM---DSNKQPDCISSVIPGWFSDISPMWPG 525
            +ATD  LKRPR++ D      N G+  ME    D  K+P C S+VIPGWFS++SPMWPG
Sbjct:    7 SATD--LKRPREEDD------NGGAATMETENGDQKKEPACFSTVIPGWFSEMSPMWPG 57          

HSP 2 Score: 38.5058 bits (88), Expect = 4.823e-14
Identity = 20/39 (51.28%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEK+L QGKSD+++V V  S+      ++DG
Sbjct:   56 PGEAHSLKVEKVLFQGKSDYQDVIVFQSATYGKVLVLDG 94          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.261e-14
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 1
Query:  364 TDFPLKRPRDDG---DKEASNNNNGSVLMEMDSNKQPDCISSVIPGWFSDISPMWPG 525
            T+ P+KRPR++    + EA+NN+N     E  S      ISSV+PGWFS+ISP+WPG
Sbjct:   12 TELPVKRPREEEAETEMEAANNSNNGCEKEESS----PYISSVLPGWFSEISPLWPG 64          

HSP 2 Score: 42.3578 bits (98), Expect = 6.261e-14
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD++NV V  SS      ++DG
Sbjct:   63 PGEAHSLKVEKILFQGKSDYQNVLVFQSSTYGKVLVLDG 101          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 6.597e-13
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1
Query:  361 ATDFPLKRPRDDGDKEASNNNNGSVLMEMDSNKQPDCISSVIPGWFSDISPMWPG 525
            +TD PLKR R+D     S+         +    QP+ +SSVIPGWFS+ISPMWPG
Sbjct:   10 STDSPLKRQREDEVNGVSDT--------LSKEPQPNGLSSVIPGWFSEISPMWPG 56          

HSP 2 Score: 40.0466 bits (92), Expect = 6.597e-13
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD+++V V  S+      I+DG
Sbjct:   55 PGEAHSLKVEKILFQGKSDYQDVMVFQSATYGKVLILDG 93          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 4.116e-12
Identity = 22/38 (57.89%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  412 SNNNNGSVLMEMDSNKQPDCISSVIPGWFSDISPMWPG 525
            +NNNNG       ++K+  CISSV+PGWFS+ISP+WPG
Sbjct:    7 NNNNNGCT-----NDKESPCISSVLPGWFSEISPLWPG 39          

HSP 2 Score: 39.6614 bits (91), Expect = 4.116e-12
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD+++V V  S+      ++DG
Sbjct:   38 PGEAHSLKVEKILFQGKSDYQDVMVFQSTTYGKVLVLDG 76          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 1.974e-11
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 1
Query:  439 MEMDSNKQPDCISSVIPGWFSDISPMWPG 525
            ME  +NK+   ISS++PGWFS+ISP+WPG
Sbjct:    1 MEEANNKESPYISSILPGWFSEISPLWPG 29          

HSP 2 Score: 43.1282 bits (100), Expect = 1.974e-11
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD++NV V  SS      I+DG
Sbjct:   28 PGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLILDG 66          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 2.561e-11
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:  406 EASNNNNGSVLMEMDSNKQPDCISSVIPGWFSDISPMWPG 525
            +A N+N+     + ++ + PD +SSVIPGWFS+ISPMWPG
Sbjct:    3 DAVNSNS-----KEEAAQLPDGVSSVIPGWFSEISPMWPG 37          

HSP 2 Score: 42.743 bits (99), Expect = 2.561e-11
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD++NV V  SS      ++DG
Sbjct:   36 PGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDG 74          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 4.315e-11
Identity = 22/39 (56.41%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  409 ASNNNNGSVLMEMDSNKQPDCISSVIPGWFSDISPMWPG 525
            A++NNNG       +N+ P  ISSV+PGWFS+ISP+WPG
Sbjct:    4 ANHNNNGC------TNESP-YISSVLPGWFSEISPLWPG 35          

HSP 2 Score: 42.743 bits (99), Expect = 4.315e-11
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD++NV V  SS      ++DG
Sbjct:   34 PGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDG 72          
BLAST of EY728892 vs. ExPASy Swiss-Prot
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 4.315e-11
Identity = 20/40 (50.00%), Postives = 28/40 (70.00%), Query Frame = 1
Query:  406 EASNNNNGSVLMEMDSNKQPDCISSVIPGWFSDISPMWPG 525
            E +N +NG      ++ K+   ISSV+PGWFS+ISP+WPG
Sbjct:    2 EVTNQSNGC----SNNEKESPYISSVLPGWFSEISPLWPG 37          

HSP 2 Score: 42.743 bits (99), Expect = 4.315e-11
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2
Query:  521 PVEARSLKVEKILCQGKSDHRNVWVLHSSADEAGGIVDG 637
            P EA SLKVEKIL QGKSD++NV V  SS      ++DG
Sbjct:   36 PGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDG 74          
The following BLAST results are available for this feature:
BLAST of EY728892 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SPD2_ARATH4.074e-1752.24Spermidine synthase 2 OS=Arabidopsis thaliana GN=S... [more]
SPD1_ARATH4.823e-1452.54Spermidine synthase 1 OS=Arabidopsis thaliana GN=S... [more]
SPDE_SOLLC6.261e-1449.12Spermidine synthase OS=Solanum lycopersicum GN=SPD... [more]
SPD1_PEA6.597e-1349.09Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ... [more]
SPD2_DATST4.116e-1257.89Spermidine synthase 2 OS=Datura stramonium PE=2 SV... [more]
SPD1_DATST1.974e-1162.07Spermidine synthase 1 OS=Datura stramonium PE=2 SV... [more]
SPDE_COFAR2.561e-1152.50Spermidine synthase OS=Coffea arabica PE=2 SV=1[more]
SPDE_NICSY4.315e-1156.41Spermidine synthase OS=Nicotiana sylvestris PE=2 S... [more]
SPD1_HYONI4.315e-1150.00Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-H12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728892 ID=EY728892; Name=EY728892; organism=Citrus sinensis; type=EST; length=831bp
CCACGCGTCCGGGCATATATAAAGCGTTGCCCACCACCTTCGCACACTTT
AAACCAAGCGCAAGCGGCAGCAAACGCTAACACAAACACGAACCGCATCT
TTGCGAAGCCAGATTTGTAACTTTTTATAATATATTCTCCCACCACTCGC
AGCTTGCAATTTTTTATTTTAATTTTTCTTTATATATAAAAGGCAAAGAG
GGACGGAGATTCTGTTTGTGTGGCGCCTCTTGACTCCCGAGAGTTGCCTC
GGCAGTCAGTTTTCATTAGAAGTGAAGTGATTGTTGGGTTTTCGGGGGTT
TGAAAGCAGAGAGAATAATCAATAATAATATCTGTTATGGCGGAAACTGG
GTCTGCTGCTGCCACTGATTTTCCGTTGAAGAGGCCGAGAGATGACGGAG
ACAAGGAGGCTAGTAACAACAATAACGGGAGTGTGTTGATGGAGATGGAC
TCTAACAAACAGCCTGATTGTATCTCCTCTGTTATTCCTGGCTGGTTCTC
TGACATCAGCCCAATGTGGCCCGGTGGAGGCACGTTCATTGAAGGTTGAG
AAAATCTTGTGTCAAGGGAAGTCTGATCACAGGAATGTGTGGGTCTTGCA
CTCTTCAGCTGACGAGGCCGGGGGGATTGTGGATGGGGGGAGTGCACCTG
GAGGGCGAGGGCTAGTAGGCTTGTGGTCATGTTCGGCTGACTGTGACCTG
GGGACAATCTTCTCGCTGCTAAGCCTCGATCAGTGGGGGGGGCGCTGCTG
GTCGGCGCGGCCCGCGGCCAGGCCGCGGCATCGGACGGTCGTGGGTGGGT
GTCGCGGCGCGGGCTCCTCGTTGCGGTGTGC
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