EY728885

Overview
NameEY728885
Unique NameEY728885
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig453 contig Csv1_Contig453:1..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_RAT (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (Fragment) OS=Rattus norvegicus GN=Ndufa9 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.682e-38
Identity = 84/170 (49.41%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            ++  G GGRSSVSG++ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+LMGDLGQ++ ++++ RD ++I+  +  +NVVINLIGRE+ETRN+ FEDV   +   IA  +KE  G+ RFI +S L A          +KA  E+ V    P A I+RP+ M G
Sbjct:   33 VIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDIYDTMHLRLMGDLGQLIFLEWDARDKDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKE-AGVERFIHVSHLNASMKSSAKSLRSKAVGEKEVRTVFPDAIIIRPSDMFG 201          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Bos taurus GN=NDUFA9 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.134e-37
Identity = 85/170 (50.00%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            ++  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV+VP R    D  HL+ MGDLGQI+ M +N RD ++I+  +  ++VVINL+GRE+ET+N+ FEDV   + + IA ++KE  G+ +FI IS L A          +KA  E+ V    P ATI++PA + G
Sbjct:   40 VIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIVPHRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSSVVINLVGREWETQNFDFEDVFVKIPQAIAQVSKE-AGVEKFIHISHLNADIKSSSKYLRSKAVGEKEVRETFPEATIIKPAEIFG 208          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pan troglodytes GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.637e-36
Identity = 81/170 (47.65%), Postives = 115/170 (67.65%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+NY FEDV   + + IA ++KE  G+ +FI +S L A           KA  E+ V    P A I++P+ + G
Sbjct:   40 LMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNYDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFG 208          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo pygmaeus GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.138e-36
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ETRN+ FEDV   + + IA ++KE  G+ +FI +S L A           KA  E+ V    P A I++P+ + G
Sbjct:   40 LIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETRNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFG 208          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Pongo abelii GN=NDUFA9 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.138e-36
Identity = 81/170 (47.65%), Postives = 114/170 (67.06%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ETRN+ FEDV   + + IA ++KE  G+ +FI +S L A           KA  E+ V    P A I++P+ + G
Sbjct:   40 LIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDTYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETRNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFG 208          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFA9 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.793e-36
Identity = 80/170 (47.06%), Postives = 115/170 (67.65%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+N+ FEDV   + + IA ++KE  G+ +FI +S L A           KA  E+ V    P A I++P+ + G
Sbjct:   40 LIPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAIIIKPSDIFG 208          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Mus musculus GN=Ndufa9 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.647e-36
Identity = 82/170 (48.24%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            ++  G GGRSSVSG++ATVFG TGFLGRYVV  L +MGSQV++P+R    D  HL+LMGD GQ+  ++++ RD ++I+  +  +NVVINLIGRE+ETRN+ FEDV   +   IA  +KE  G+ RFI +S L A          +KA  E+ V    P A I+RP+ + G
Sbjct:   40 VIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDVYDIMHLRLMGDPGQLTFLEWDARDKDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKE-AGVERFIHVSHLNASMKSSSKSLRSKAVGEKEVRSVFPEAIIIRPSDIFG 208          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Homo sapiens GN=NDUFA9 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.764e-36
Identity = 80/170 (47.06%), Postives = 115/170 (67.65%), Query Frame = 1
Query:  169 LVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            L+  G GGRSSVSGI+ATVFG TGFLGRYVV  L +MGSQV++P+R  + D  HL+ MGDLGQ++ ++++ RD ++I+  +  +NVVINLIGR++ET+N+ FEDV   + + IA ++KE  G+ +FI +S L A           KA  E+ V    P A I++P+ + G
Sbjct:   40 LMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKE-AGVEKFIHVSHLNANIKSSSRYLRNKAVGEKVVRDAFPEAIIVKPSDIFG 208          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_DICDI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial OS=Dictyostelium discoideum GN=ndufa9 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.911e-34
Identity = 75/180 (41.67%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  142 SVATPGTGHLVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDP-RHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            S +T     L R   G R+  +G++ATVFG TGF GRY+VQ LA+ G QV+VP+R CED+  R LK++G+LGQI+P++F+ RD  +I+  ++ +N+VIN+ GR+YETRN+S +D+N   A RIA ++K    + ++I +S L A          +KA  E+     +P  T++RP+ + G
Sbjct:   17 SFSTINENPLTRIHHGSRTQTTGLVATVFGATGFTGRYLVQLLARTGIQVVVPYR-CEDEGFRDLKVLGELGQIIPVRFDIRDSESIERAISHSNIVINMAGRDYETRNFSLDDINVHAASRIADLSK---NVEKYIHVSTLRASEDSPSHFSRSKAIGEKLTREIIPNCTVVRPSIIFG 192          

HSP 2 Score: 23.8682 bits (50), Expect = 2.911e-34
Identity = 7/21 (33.33%), Postives = 14/21 (66.67%), Query Frame = 2
Query:  683 EDRLLNKWAQFVKKFNFFPLF 745
            ED+ +NKW++  + + F P +
Sbjct:  194 EDKFINKWSKVSQNWPFIPRY 214          
BLAST of EY728885 vs. ExPASy Swiss-Prot
Match: NDUA9_NEUCR (NADH-ubiquinone oxidoreductase 40 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-40 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.098e-32
Identity = 81/190 (42.63%), Postives = 115/190 (60.53%), Query Frame = 1
Query:  109 NGADHRRFGSTSVATPGTGHLVRKGTGGRSSVSGIIATVFGTTGFLGRYVVQQLAKMGSQVLVPFRGCEDDPRHLKLMGDLGQIVPMKFNPRDDNTIKATMAKANVVINLIGREYETRNYSFEDVNHFMAERIAGIAKEHGGIMRFIQISCLGAXXXXXXXXXXTKAAAEEAVLRELPWATIMRPAAMIG 678
            N    +R   + V    TG  + +  GGRSS+ G  ATVFG TG LGRY+V +LA+ G  V++PFR  E + RHLK+ GDLG++V ++F+ R+  +I+ ++  ++VV NLIGR+Y T+N+SFEDV+   AERIA    ++  + RFI +S   A          TKA  E+ V    P  TI+RPA M G
Sbjct:   18 NAFGFQRRAISDVTITRTGKPIIRNQGGRSSLGGHTATVFGATGQLGRYIVNRLARQGCTVVIPFRD-EYNKRHLKVTGDLGKVVMIEFDLRNTQSIEESVRHSDVVYNLIGRDYPTKNFSFEDVHIEGAERIAEAVAKY-DVDRFIHVSSYNADPNSECEFFATKARGEQVVRSIFPETTIVRPAPMFG 205          
The following BLAST results are available for this feature:
BLAST of EY728885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NDUA9_RAT8.682e-3849.41NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_BOVIN1.134e-3750.00NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PANTR1.637e-3647.65NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PONPY2.138e-3647.65NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_PONAB2.138e-3647.65NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_GORGO2.793e-3647.06NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_MOUSE3.647e-3648.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_HUMAN4.764e-3647.06NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_DICDI2.911e-3441.67NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA9_NEUCR1.098e-3242.63NADH-ubiquinone oxidoreductase 40 kDa subunit, mit... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-H03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728885 ID=EY728885; Name=EY728885; organism=Citrus sinensis; type=EST; length=860bp
CACGCGTCCGACGATGCAGGCCATCACAAGGCGATTAAGGCCCAATCTGT
ACAGCCCGCAACTTCCATTTCTTCTCTTAAATCGGTTTACCCGCTCTCCG
ATTACTATAATGGAGCTGATCATCGGAGATTTGGATCTACTTCGGTCGCC
ACTCCCGGTACCGGCCACCTTGTTCGTAAGGGCACTGGTGGAAGATCTTC
TGTTAGTGGCATTATAGCTACAGTGTTTGGCACAACTGGGTTCCTTGGAC
GTTATGTTGTGCAACAACTTGCTAAAATGGGATCTCAAGTGCTAGTTCCT
TTCCGGGGCTGTGAGGATGATCCTCGTCATCTCAAGTTGATGGGAGATTT
GGGACAGATTGTACCGATGAAGTTTAACCCAAGAGACGATAACACAATCA
AGGCTACAATGGCAAAGGCTAATGTTGTTATCAATCTTATTGGAAGAGAG
TATGAGACCAGAAACTACAGCTTTGAGGATGTGAACCATTTTATGGCTGA
ACGCATTGCAGGGATTGCAAAAGAACATGGTGGCATCATGAGATTTATTC
AAATTTCTTGCTTAGGGGCATCTTCATCATCTCCATCAAGAGTGTNTAGT
ACTAAAGCTGCTGCTGAGGAAGCTGTTTTGAGAGAATTACCTTGGGCCAC
AATTATGAGGCCTGCTGCNATGATTGGTACCCGAGGATCGGCTTTTGAAT
AAGTGGGCACAGTTTGTGAAAAAATTTAATTTTTTTCCTCTTTTTGGGGG
ATGGATCTACCANAATCCAACCTGTATATGTTGTTGATGTTGCTGCTGCA
TCACTGCAGCGTTAAAGATGATGGACCAGCATGGGAAAATTACGAGTTGG
GTGGTCAGAT
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