EY728860

Overview
NameEY728860
Unique NameEY728860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728860 vs. ExPASy Swiss-Prot
Match: FUS_MOUSE (RNA-binding protein FUS OS=Mus musculus GN=Fus PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.574e-15
Identity = 68/176 (38.64%), Postives = 81/176 (46.02%), Query Frame = 3
Query:   36 SYSQPPASGYNQQG-QGYAQDSYGGY--HAPQSGYGQAAPYDQQQGYNSAAGYGNVNNTSQEGHTPSYGAQGDSTQAPPPVQSSAAMGQQGYGTGQQPSPNTASYPPQGATQ-PSYGVPPTSQSGYGSQVPPQSGYAG----YGMPQAQKPLANPP-AYGQTQQSPGSAGGYGQPG 536
            +Y   P  GY+QQ  Q Y Q SY GY   A  SGYGQ++ Y    G     GYG  +     G T  YG+   S       QSS        G GQQP+P++ S    G++Q  SYG P     GYG     QSGY G    YG  Q+     NPP  YGQ  Q   S+GG G  G
Sbjct:   16 AYPTQPGQGYSQQSSQPYGQQSYSGYGQSADTSGYGQSS-YGSSYGQTQNTGYGTQSAPQGYGSTGGYGSSQSS-------QSSYGQQSSYPGYGQQPAPSSTSGSYGGSSQSSSYGQP--QSGGYGQ----QSGYGGQQQSYGQQQSS---YNPPQGYGQQNQYNSSSGGGGGGG 174          
BLAST of EY728860 vs. ExPASy Swiss-Prot
Match: FUS_BOVIN (RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.574e-15
Identity = 66/180 (36.67%), Postives = 82/180 (45.56%), Query Frame = 3
Query:   36 SYSQPPASGYNQQG-QGYAQDSYGGY--HAPQSGYGQAAPYDQQQGYNSAAGYGNVNNTSQEGHTPSYGAQGDSTQAPPPVQSSAAMGQQGYGTGQQPSPNTASYPPQGATQPSYGVPPTSQSGYGSQVPPQSGYAGYGMPQAQKPLANPP-AYGQTQQSPGSAGGYGQPGYSHSQPPPS 563
            +Y   P  GY+QQ  Q Y Q SYGGY      SGYGQ++ Y    G     GY     ++ +G++ S G  G S  +    QSS        G GQQP+P+  S    G++  S G       GYG     QSGY G      Q+   NPP  YGQ  Q   S GG G  G S+ Q  PS
Sbjct:   16 AYPTQPGQGYSQQSNQPYGQQSYGGYGQSTDTSGYGQSS-YSGSYGQTQNTGYS--TQSAPQGYS-SAGGYGSSQSS----QSSYGQQSSYPGYGQQPAPSGTS-GSYGSSSQSSGYGQPQGGGYGQ----QSGYGGQQQSYGQQQSYNPPQGYGQQSQYNSSGGGGGGGGGSYGQDQPS 182          
BLAST of EY728860 vs. ExPASy Swiss-Prot
Match: FUS_HUMAN (RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.274e-14
Identity = 68/186 (36.56%), Postives = 81/186 (43.55%), Query Frame = 3
Query:   36 SYSQPPASGYNQQG-QGYAQDSYGGY--HAPQSGYGQAAPYDQQQGYNSAAGYGNVNNTSQEGHTPSYGAQGDSTQAPPPVQSSAAMGQQGYGTGQQPSPNTASYPPQGATQ-PSYGVPPTSQSGYGSQVPPQSG-YAGYGMPQAQKPLANPPAYGQTQQ----SPGSAGGYGQPGYSHSQPPPSS 566
            +Y   P  GY+QQ  Q Y Q SY GY      SGYGQ++     Q  N+  GYG  +     G T  YG+   S       QSS        G GQQP+P++ S     ++Q  SYG P   QSG  SQ P   G    YG  Q+  P   P  YGQ  Q    S G  GG G   Y   Q   SS
Sbjct:   16 AYPTQPGQGYSQQSSQPYGQQSYSGYSQSTDTSGYGQSSYSSYGQSQNT--GYGTQSTPQGYGSTGGYGSSQSS-------QSSYGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQP---QSGSYSQQPSYGGQQQSYGQQQSYNP---PQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSS 186          
BLAST of EY728860 vs. ExPASy Swiss-Prot
Match: EWS_MOUSE (RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.128e-13
Identity = 75/215 (34.88%), Postives = 89/215 (41.40%), Query Frame = 3
Query:   18 ADSTGYS-YSQPPASGYNQQGQGYAQDSYGGYHAPQSGYGQAAPYDQQQGYNSAAGYGNVNNTSQEGHTPSYGAQGDSTQAPPPVQSSAAMGQQGYGTGQQPSPNTASYPPQGATQPSYGVPPTSQSGYGSQVPPQSGYAGYGM-PQAQKPL----ANPPAYGQTQQSPGSAGGYGQPG-------YSHSQPPPSSYAQPDSGSQRAPPSNYGAA 623
            A   GYS Y+  P  GY Q  Q Y Q SYG Y  P         Y Q Q   + A YG     +  G  P+    G ST   P   S      QGYGTG   S  TA+      TQ SY     +QS YG+Q      Y  YG  P A  P      N PA  +T Q   S GGY QP        YS+ Q P S   QP +     PP++Y ++
Sbjct:   13 AAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTD-----VSYTQAQ---TTATYGQTAYATSYGQPPT----GYSTPTAPQAYSQPV---QGYGTGAYDS-TTATVT---TTQASYA----AQSAYGTQ----PAYPTYGQQPTATAPTRPQDGNKPA--ETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSS 198          
BLAST of EY728860 vs. ExPASy Swiss-Prot
Match: EWS_HUMAN (RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.128e-13
Identity = 73/234 (31.20%), Postives = 98/234 (41.88%), Query Frame = 3
Query:   18 ADSTGYS-YSQPPASGYNQQGQGYAQDSYGGYHAPQS-GYGQA---APYDQQQGYNSAAGY---GNVNNTSQEGHTPSYGAQG----DSTQAPPPVQSSAAMGQQGYGT-------GQQPSPNTASYPPQGATQPSYGVPPTSQSGYGSQVPPQSGYAGYGMPQA-----QKPLANPPAYGQTQQSPGSAGGYGQPGYS--HSQPPPSSYAQPDSGSQRA-----PPSNYGAAT 626
            A   GYS Y+  P  GY Q  Q Y Q SYG Y  P    Y QA   A Y  Q  Y ++ G    G    T+ + ++      G    D+T A      ++   Q  YGT       GQQP+  TA   PQ   +P+    P S +G  +Q     G + Y  PQ       +P+  PP+Y  T  S      Y Q  YS  ++   PSSY Q  S  Q++     PP++Y   T
Sbjct:   13 AAQQGYSAYTAQPTQGYAQTTQAYGQQSYGTYGQPTDVSYTQAQTTATYG-QTAYATSYGQPPTGYTTPTAPQAYSQPVQGYGTGAYDTTTATVTTTQASYAAQSAYGTQPAYPAYGQQPAA-TAPTRPQDGNKPTETSQPQSSTGGYNQPSLGYGQSNYSYPQVPGSYPMQPVTAPPSYPPTSYSSTQPTSYDQSSYSQQNTYGQPSSYGQQSSYGQQSSYGQQPPTSYPPQT 244          
BLAST of EY728860 vs. ExPASy Swiss-Prot
Match: ANXA7_DICDI (Annexin A7 OS=Dictyostelium discoideum GN=nxnA PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.128e-12
Identity = 63/171 (36.84%), Postives = 66/171 (38.60%), Query Frame = 3
Query:   42 SQPPASGYNQQGQGYAQDSYGGYHAPQSGYGQAAPYDQQQGYNSAAGYGNVNNTSQEGHTPSYGAQGDSTQAP----PPVQSSAAMGQQGYGTGQQPSPNTASYPPQGATQPSYGVPPTSQSGYGSQVPPQSGYAGYGMPQAQ-KPLANPPAYGQTQQSPGSAGGYGQPGY 539
            S PP  GY  Q        YG   APQ GY     Y  QQGY    GY       Q+G+ P  G        P    PP Q      QQGY   QQ  P    YPPQ    P  G PP  Q GY    PPQ GY   G P  Q  P    P       +PG   GY Q GY
Sbjct:    2 SYPPNQGYPPQSNSPQPGQYG---APQQGYPPQQGYPPQQGYPPQQGY-----PPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPP--QQGYPP-QQGYPPQQGYPPQQGYPPQQGYPP--QQGY----PPQQGYPPQGYPPQQGYPPVGVPVGVPVGFAPGMVVGYHQ-GY 154          
The following BLAST results are available for this feature:
BLAST of EY728860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
FUS_MOUSE1.574e-1538.64RNA-binding protein FUS OS=Mus musculus GN=Fus PE=... [more]
FUS_BOVIN1.574e-1536.67RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 ... [more]
FUS_HUMAN2.274e-1436.56RNA-binding protein FUS OS=Homo sapiens GN=FUS PE=... [more]
EWS_MOUSE1.128e-1334.88RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 P... [more]
EWS_HUMAN1.128e-1331.20RNA-binding protein EWS OS=Homo sapiens GN=EWSR1 P... [more]
ANXA7_DICDI2.128e-1236.84Annexin A7 OS=Dictyostelium discoideum GN=nxnA PE=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-E10-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728860 ID=EY728860; Name=EY728860; organism=Citrus sinensis; type=EST; length=856bp
CCACGCGTCCGGCACCAGCAGATAGTACTGGTTACAGTTACAGTCAGCCA
CCAGCTTCTGGCTATAATCAGCAGGGCCAAGGTTATGCTCAAGATAGCTA
TGGTGGATACCATGCACCTCAGTCAGGCTATGGGCAGGCAGCGCCATATG
ATCAGCAACAAGGCTATAATTCTGCAGCTGGTTATGGTAATGTGAACAAC
ACAAGTCAGGAGGGTCATACTCCTTCTTATGGAGCTCAAGGAGATTCAAC
ACAGGCTCCTCCACCAGTCCAGTCATCTGCTGCGATGGGCCAGCAGGGTT
ATGGTACCGGCCAGCAGCCTAGTCCAAACACTGCCAGTTATCCACCACAA
GGAGCTACTCAGCCCAGTTATGGCGTGCCTCCAACTTCGCAGAGTGGCTA
TGGGAGTCAGGTCCCACCCCAGTCTGGGTATGCTGGCTATGGGATGCCTC
AAGCACAGAAACCTCTTGCCAATCCACCTGCTTATGGACAGACTCAGCAG
TCACCTGGCTCTGCTGGTGGTTATGGACAGCCTGGATATTCCCATTCACA
ACCACCACCTTCTAGTTATGCACAACCAGATTCGGGTTCTCAACGTGCAC
CACCATCCAATTATGGTGCTGCAACTCAGCCAGGTTATGGAAGTGCAGCA
TATGGTGCACCACCAGGAGGTAGTCAGGCAGGTTATGGTCAGGGGCCACC
GTCTTACTATGGTGGTGGGTATNCACAGCCTGTATACACTGCTGATGGGA
ATGANCACTGCTGCTCACCTGTGCACAGGGTGGGTGACAAGCCCCCCCCC
CCAAACATTACTCTCTTGTGGGAGCGGGAAACTTCACTTTTTGTTGGCGT
CCGTTT
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