EY728846

Overview
NameEY728846
Unique NameEY728846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10 contig Csv1_Contig10:2..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728846 vs. ExPASy Swiss-Prot
Match: ARID2_HUMAN (AT-rich interactive domain-containing protein 2 OS=Homo sapiens GN=ARID2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.191e-16
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 2
Query:   26 PPTAKYEDIAQSSDLFWATLEAFHKSFGDKFK-VPTVGGKALDLHRLFVEVTSRGGLGKVIKDRRWKEVVVVFNFPTTITSASFVLRKYYLSLLYHFEQVYYFRKE 340
            PP  + + +A     F   L  FH S G  FK +P VGGK LDLH L+  VT+ GG  KV +  +W E+V  FNFP + ++A+F L++YYL  L  +E+V++F ++
Sbjct:    9 PPDERRKGLA-----FLDELRQFHHSRGSPFKKIPAVGGKELDLHGLYTRVTTLGGFAKVSEKNQWGEIVEEFNFPRSCSNAAFALKQYYLRYLEKYEKVHHFGED 109          
The following BLAST results are available for this feature:
BLAST of EY728846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARID2_HUMAN3.191e-1641.51AT-rich interactive domain-containing protein 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-D02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728846 ID=EY728846; Name=EY728846; organism=Citrus sinensis; type=EST; length=858bp
ACCACGCGTCCGCAGTTACTACCCTCCACCAACAGCCAAGTACGAGGATA
TTGCTCAGAGTTCTGATCTTTTCTGGGCTACTCTCGAAGCATTTCACAAG
TCTTTTGGTGACAAATTCAAGGTTCCTACTGTAGGAGGAAAGGCGCTCGA
TCTGCATCGCCTTTTTGTGGAGGTGACATCTCGTGGTGGTCTTGGAAAGG
TAATTAAAGATCGTAGATGGAAGGAAGTGGTTGTGGTCTTCAACTTTCCC
ACAACGATTACCAGTGCATCATTTGTATTACGGAAGTATTATCTCTCATT
ACTTTACCACTTCGAGCAAGTCTACTACTTCCGCAAAGAAGCTCCTTCAT
CGTCAATGCCTGATGCTGTAAGCGGGAGCAGCCTTGACAATGGATCAGCA
TCCCCAGAGGAAGGTTCCACAATTAACCAGTTGGGCGGTCAGGGGAGTTC
AAAATTGCAGATTGGCTGTTCAGTTTCTGGAGTCATTGATGGGAAATNTG
ATAATGGATATCTGGTCACTGTGAACTTGGGTTCTGAACAACTTAAAGGT
GTCTTATATCATATTCCTCATGCACATAATGTGTCTCANAAGTCTAATAA
TTCAGCCGCGCCTACTCACCGACGTCGAAAGAGATCTCGGTTGGGCTTAC
GAGATCCCTCTCGGCCCCAGTCAACAGGGAGTGGTTACAATTCTTCTTTG
CTGAGCACTATGCCCGACTAAAGCACACTACTATGGACCAGAGAAGCCAT
CACCANAAAATAGGGTCCTTTGGAGCAATCTCCCGGAAGCTGAAAACAAG
TTTACCAGAGAAAGGGTTAAGGACAAGGAACATACAGTTTGAGATGTTGG
AATACAGA
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