EY728827

Overview
NameEY728827
Unique NameEY728827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11786 contig Csv1_Contig11786:1..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 5.060e-91
Identity = 168/258 (65.12%), Postives = 204/258 (79.07%), Query Frame = 2
Query:   11 DSSDIISNPCNIQCWKGSSDAQSKKTDEKAQISSQG--LLMKDACGGPDSPYASQSGLTAARKQRVRAQLNDLKEYYLQKRRQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTHYSRLRVIAELMHGDLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            +SS + S+P N++    SS + +KK D K+QISS G  +  +D   G DS Y +QSGL   RK+RV  Q NDL+E YLQKRRQ+  + H + E D   +SREGY  GL+DF+SVL TFT YSRLRVIAE+ HGD+FH+ANI+SSIEFDRDD+LFATAGVSRRIK+F+FS+VVNEP D H P+VEM TRSKLSCLSWNKY KN IASSDY+GIVT+W +TT +S+MEYEEH+KRAWSVDFS T+PSM +SGSDDC VKV
Sbjct:  231 NSSGLASSPLNLRGGL-SSGSHTKKNDGKSQISSHGHGIQRRDPITGSDSQYINQSGLALVRKKRVHTQFNDLQECYLQKRRQAADKPHGQQERDTNFISREGYSCGLDDFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCPVVEMTTRSKLSCLSWNKYAKNQIASSDYEGIVTVWTMTTRKSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDDCKVKV 487          
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 329.717 bits (844), Expect = 1.246e-89
Identity = 169/259 (65.25%), Postives = 198/259 (76.45%), Query Frame = 2
Query:    2 HASDSSDIISNPCNIQCWKGSSDAQSKKTDEKAQISSQGLLMKDACGGPDSPYASQSGLTAARKQRVRAQLNDLKEYYLQKRRQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTHYSRLRVIAELMHGDLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            H  +     SN  +I+      + Q+KK + KAQ SS GL  KDA  G DS   +QS ++ ARK+R+ AQ NDL+E YLQKRRQ   Q + + E D   V REGY  GL DF+SVL TFT YSRLRVIAE+ HGD+FH+ANI+SSIEFDRDDELFATAGVSR IK+F+FSSVVNEP D+  P+VEM TRSKLSCLSWNK+ KN IASSDY+GIVT+WDVTT QS+MEYEEH+KRAWSVDFS TEPSM +SGSDDC VKV
Sbjct:  232 HEKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKV 490          
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.350e-43
Identity = 96/257 (37.35%), Postives = 147/257 (57.20%), Query Frame = 2
Query:   68 DAQSKKTDEKAQISSQGLLMKDACGGPDSPYASQSG---LTAARKQRVRAQLNDLKEYYLQKRRQ-------STAQSHK---------EDEGDLYAVSREGYHPG-LEDFRSVLATFTHYSRLRVIAELMHGDLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            +A+ + +   + + S G + K     P   + + S    +  A   R+ + +  L++ Y   R Q       +TA+S K         E++ +   +S +G     LE F   L  F  YS+      +  GDL ++A+++ S+ FD D+E  A AG+S++IKIF+F++ +NE   VHYP+VEM  +SKLSC+ WN Y KN +AS+DYDG+V IWD  T Q   +Y EH KRAWSVDFS ++P+  +SGSDDC+VK+
Sbjct:  579 EAERRYSSNVSLVRSHGAIEKRVQSSPLDEHCTTSSALFVPTANTDRLMSNIRQLEDAYFFMRSQINLSSSAATARSDKTLKDRDRCSENQNENQDMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWDAGTGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKL 835          
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 9.677e-42
Identity = 87/200 (43.50%), Postives = 130/200 (65.00%), Query Frame = 2
Query:  182 AARKQRVRAQLNDLKEYYLQKRRQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTHYSRLRVIAELMHG-DLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            A+R++R+ A   DL++ Y      ST  S   D+      SR      L++F+  L+ FT Y+ +R +A L +  DL++ ++I+SSIEFDRD + FA AGV+++IK++E+ +V+ +  D+HYP  EM   SK+SC+SW+ Y KNL+ASSDY+G V +WD  T Q    Y+EH+KR WSVDF+  +P +  SGSDD  VK+
Sbjct:  356 ASRRKRLTAHFEDLEQCYF-----STRMSRISDD------SRTASQ--LDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL 542          
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.677e-42
Identity = 87/200 (43.50%), Postives = 130/200 (65.00%), Query Frame = 2
Query:  182 AARKQRVRAQLNDLKEYYLQKRRQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTHYSRLRVIAELMHG-DLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            A+R++R+ A   DL++ Y      ST  S   D+      SR      L++F+  L+ FT Y+ +R +A L +  DL++ ++I+SSIEFDRD + FA AGV+++IK++E+ +V+ +  D+HYP  EM   SK+SC+SW+ Y KNL+ASSDY+G V +WD  T Q    Y+EH+KR WSVDF+  +P +  SGSDD  VK+
Sbjct:  354 ASRRKRLTAHFEDLEQCYF-----STRMSRISDD------SRTASQ--LDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKL 540          
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.264e-41
Identity = 79/151 (52.32%), Postives = 112/151 (74.17%), Query Frame = 2
Query:  326 LEDFRSVLATFTHYSRLRVIAELMHGDLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            ++ F   L  +  +S+LRV A+L  GDL +++N++ ++ FDR+ ELFATAGV+++IKIFE +S+VN+ RD+HYP+VE+  RSKLS L WN Y K+ IASS++DG+V IWDV  SQ V E +EH KR WS+D S  +P++  SGSDD  VK+
Sbjct:  503 IDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDREGELFATAGVNKKIKIFECNSIVNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASSNFDGVVQIWDVARSQLVTEMKEHKKRVWSIDISSADPTLLASGSDDGTVKL 653          
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.651e-41
Identity = 78/144 (54.17%), Postives = 105/144 (72.92%), Query Frame = 2
Query:  347 LATFTHYSRLRVIAELMHGDLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            L  +  YS+      L   +L + +N+I S+ FDRD++ FATAGVS++IKI+EF+S+ NE  D+HYP +EMP RSKLS + WN Y +N +ASSDYDGIV +WDVTT Q++  + EH+KRAWSVDFS   P+   SGSDDC+VK+
Sbjct:  699 LCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKL 842          
BLAST of EY728827 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.677e-41
Identity = 80/177 (45.20%), Postives = 122/177 (68.93%), Query Frame = 2
Query:  248 RQSTAQSHKEDEGDLYAVSREGYHPGLEDFRSVLATFTHYSRLRVIAELMHGDLFHAANIISSIEFDRDDELFATAGVSRRIKIFEFSSVVNEPRDVHYPMVEMPTRSKLSCLSWNKYTKNLIASSDYDGIVTIWDVTTSQSVMEYEEHDKRAWSVDFSCTEPSMPLSGSDDCNVKV 778
            R S   S  +   D    SR+G    ++ F   L  +  +S+LRV A+L  GDL +++N++ +I FDRD E FATAGV+++IKIFE  S++ + RD+HYP+VE+ +RSKLS + WN Y K+ +ASS+++G+V +WDV  +Q V E +EH+KR WS+D+S  +P++  SGSDD +VK+
Sbjct:  429 RSSEKSSMSQPSKDPINDSRQG--GWIDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKL 603          
The following BLAST results are available for this feature:
BLAST of EY728827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
COP1_PEA5.060e-9165.12E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
COP1_ARATH1.246e-8965.25E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
SPA1_ARATH1.350e-4337.35Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
RFWD2_MOUSE9.677e-4243.50E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus ... [more]
RFWD2_HUMAN9.677e-4243.50E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens ... [more]
SPA3_ARATH1.264e-4152.32Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
SPA2_ARATH1.651e-4154.17Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=... [more]
SPA4_ARATH3.677e-4145.20Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-009-B06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728827 ID=EY728827; Name=EY728827; organism=Citrus sinensis; type=EST; length=848bp
CCACGCGTCCGACAGCAGTGATATTATCTCTAACCCCTGCAACATACAAT
GCTGGAAAGGTTCATCTGATGCACAGAGCAAGAAGACTGATGAGAAGGCT
CAAATAAGCTCTCAAGGACTGCTAATGAAGGATGCTTGCGGTGGACCTGA
TTCGCCATATGCATCTCAATCTGGTCTGACTGCAGCAAGAAAGCAACGAG
TCCGTGCTCAGTTAAATGACTTAAAAGAGTATTACTTGCAAAAGCGGCGG
CAATCGACCGCACAATCGCATAAAGAGGATGAAGGGGACTTATATGCAGT
AAGTAGAGAAGGTTATCATCCTGGTCTTGAGGATTTCCGGTCCGTCCTTG
CTACTTTTACTCATTACAGTCGACTGAGGGTCATTGCTGAACTTATGCAT
GGAGACCTGTTCCATGCTGCCAATATTATCTCCAGTATAGAATTTGACCG
TGATGACGAGTTGTTTGCTACTGCTGGAGTTTCAAGGCGCATTAAGATTT
TTGAGTTTTCCTCGGTGGTGAATGAACCAAGAGATGTGCATTATCCCATG
GTGGAGATGCCTACTCGATCTAAACTTAGTTGCTTGAGTTGGAACAAGTA
CACAAAAAACCTTATTGCTAGCAGTGATTATGACGGGATAGTAACTATCT
GGGATGTAACCACTAGTCAGAGTGTGATGGAATATGAGGAGCATGACAAA
CGAGCTTGGAGTGTTGACTTTTCATGCACTGAACCTTCAATGCCACTATC
CGGAAGTGATGACTGCAACGTAAAGGTGGCTGTTCTCGTNAACATCATAT
TGTAGGACCGCCTCGTTTGGTAGTGGGACCCAACGGGATGGAGTTGAC
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