EY728806

Overview
NameEY728806
Unique NameEY728806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11785 contig Csv1_Contig11785:1..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 5.008e-64
Identity = 134/238 (56.30%), Postives = 156/238 (65.55%), Query Frame = 3
Query:   69 PLSIT*VSTATKGNHFGLSGNKSLAAVSSNSMYWPNRAENVTESFAPVVNKECSEKRQGNGNTCRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPKVKLQVN 782
            P S+   S   K   FG  GNKS   VS  S +WP  A++  ESFA   N E +EK+Q NGN CRLFG +LV+N NV+E   A ++SGA+  D+ +P  + DS Q SEP NIN+SD+PS S D EKS LRSPQESQSRQIRSCTKVHMQG AVGRA+DLTR +CYEDL KKLEEM DI+G+L   TKKWQVVYT         G            + FIYT EEVK L PK KL VN
Sbjct:  403 PSSVPLFSPPAKAATFGHGGNKSFG-VSIGSAFWPTNADSAAESFASAFNNESTEKKQTNGNVCRLFGFELVENVNVDECFSAASVSGAVAVDQPVPSNEFDSGQQSEPLNINQSDIPSGSGDPEKSSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVN 639          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.568e-41
Identity = 105/218 (48.17%), Postives = 135/218 (61.93%), Query Frame = 3
Query:  129 NKSLAAVSSNSMYWPNRAENVTESFAPVVNKECSEKRQGNGNT-CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPKVKLQV 779
            +K+  ++ SN  YW  R ++ T+SF+   NK   E++Q      CRLFGI++  +S VEEA PA T+SG +G D+ +  +D DSDQ S+PSN N+SD P  S +      RSP ESQSRQ+RSCTKV MQG+AVGRAVDLT+ + Y DL  KLEEM DI+GDLC   K+WQVVYT         G           +  +IY+ EE K L PK KL V
Sbjct:  436 SKNEPSILSNQFYWSMR-DSKTDSFSASTNKTRVERKQEPTTMGCRLFGIEI--SSAVEEALPAATVSG-VGYDQTVLSVDVDSDQISQPSNGNKSDAPGTSSE------RSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAKLLAPKSKLPV 643          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.467e-39
Identity = 100/222 (45.05%), Postives = 132/222 (59.46%), Query Frame = 3
Query:  117 GLSGNKSLAAVSSNSMYWPNRAENVTESFAPVVNKECSEKRQGNGNT-CRLFGIQLVDNSNVEEASPAFTMSGAMGDDRAIPCLDADSDQHSEPSNINRSDVPSVSCDAEKSCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPKVKLQV 779
            G S     +A+S+   YWP R E    S++  ++K  SEK+Q   +  CRLFGI++  +S VE  SP   +SG +G D+    +DA+SDQ S+PS+ N+SD P+ S +       SP E+QSRQ+RSCTKV MQG+AVGRAVDLTR   Y+DL  KLEEM DI+G+L    KKW+VVYT         G           +  +IYT EE K L PK KL +
Sbjct:  433 GFSTKNEPSALSNKHFYWPMR-ETRANSYSASISKVPSEKKQEPSSAGCRLFGIEI--SSAVEATSPLAAVSG-VGQDQPAASVDAESDQLSQPSHANKSDAPAASSEP------SPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLPI 644          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.209e-17
Identity = 62/184 (33.70%), Postives = 91/184 (49.46%), Query Frame = 3
Query:  237 RQGNGNTCRLFGIQLVDNSNVEE--ASPAFTMSGAMGDDRAIPCLDADSDQHSEPSN-INRSDVPSVSCDAEK--SCLRSPQESQSRQ----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVP 761
            ++  G++C LFGI L   +  E   + P+    G +  D        + D+ S+PS  +   D        EK  SC    +  QS+Q     RSC KVH QGIA+GR++DLT+F CY++L+ +L++M D  G+L   +K W VVYT         G            + FIYT EEV+ + P
Sbjct:  626 QKAKGSSCMLFGISLDSPAKPELLISPPSVAFDGKLQQDAL------EEDECSDPSKTVKPLDGAQHDSAREKHQSCPDGTKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNP 803          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.977e-16
Identity = 68/209 (32.54%), Postives = 104/209 (49.76%), Query Frame = 3
Query:  213 VNKECSEKRQGNGNTCRLFGIQLVDNSNVEEA--SPAFTMSGAMGDDR-AIPCLDADSDQH--SEPSNINRSDVPSVSCDAEKSCLRSPQESQSR--QIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVPKVKLQVNRSSCRQPNVEVV 818
            + +E ++ R+GN   CRLFGI L +N N  ++  S    ++ A G  + A P +   SDQ   S+ +N +R        +        P+++Q++    RSCTKVH QGIA+GR+VDL++F  YE+L+ +L+ + +  G+L    K W +VYT         G            + FIYT EEV+ + P         SCR     VV
Sbjct:  642 IQEETAKSREGN---CRLFGIPLTNNMNGTDSTMSQRNNLNDAAGLTQIASPKVQDLSDQSKGSKSTNDHREQGRPFQTNNPH-----PKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNP------GTLSCRSEEEAVV 836          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 61/186 (32.80%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  237 RQGNGNTCRLFGIQLVDNSNVE--EASPAFTMSGAMGDDRAIPCLDADS---DQHSEPSNINRS-DVPSVSCDAEKSCLRSPQ-----ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVP 761
            ++  G +C+LFGI L   +  E  ++  +    G      A      D    ++ S+PS   +  D P      EK   +        +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++M D  G+L G  K+W VVYT         G            + FIYT EEV+ + P
Sbjct:  630 QKAKGASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPSSQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNP 815          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 61/186 (32.80%), Postives = 89/186 (47.85%), Query Frame = 3
Query:  237 RQGNGNTCRLFGIQLVDNSNVE--EASPAFTMSGAMGDDRAIPCLDADS---DQHSEPSNINRS-DVPSVSCDAEKSCLRSPQ-----ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYTXXXXXXXXGGR*SMA*VLXHGEENFIYTAEEVKNLVP 761
            ++  G +C+LFGI L   +  E  ++  +    G      A      D    ++ S+PS   +  D P      EK   +        +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++M D  G+L G  K+W VVYT         G            + FIYT EEV+ + P
Sbjct:  630 QKAKGASCKLFGIHLDSPAKSEPLKSPSSVVYDGTPQTPGATEWRRPDVTEVEKCSDPSKAMKPLDTPQPDSVPEKPSSQQASRNMSCKSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNP 815          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 1.785e-13
Identity = 31/69 (44.93%), Postives = 48/69 (69.57%), Query Frame = 3
Query:  453 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYT 650
            LRSP E Q++Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++ DI+G L     +W++ +T
Sbjct:  496 LRSPTEIQNKQFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQL-QTRNQWEIAFT 563          

HSP 2 Score: 34.2686 bits (77), Expect = 1.785e-13
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  676 VGDDPWHEFCXMVRKI 723
            VGDDPW EFC MV+KI
Sbjct:  572 VGDDPWPEFCNMVKKI 587          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 62.003 bits (149), Expect = 3.011e-13
Identity = 31/73 (42.47%), Postives = 48/73 (65.75%), Query Frame = 3
Query:  441 EKSCLRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYT 650
            +   LRSP E QS+Q    R+CTKV MQG+ + RAVDL+  + Y+ L+ +LEE+ D++G L     +W++ +T
Sbjct:  490 QSQTLRSPTEIQSKQFSSTRTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQL-QTRNQWEIAFT 561          

HSP 2 Score: 34.2686 bits (77), Expect = 3.011e-13
Identity = 13/16 (81.25%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  676 VGDDPWHEFCXMVRKI 723
            VGDDPW EFC MV+KI
Sbjct:  570 VGDDPWPEFCNMVKKI 585          
BLAST of EY728806 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.883e-13
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  474 QSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMXDIEGDLCGFTKKWQVVYT 650
            QS   R CTKVH QG  VGRA+DL+R + Y+DLL +LE + ++EG L    K W+++YT
Sbjct:  660 QSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYT 718          

HSP 2 Score: 33.4982 bits (75), Expect = 3.883e-13
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 1
Query:  676 VGDDPWHEFCXMVRKI 723
            VGDDPWH+FC +V KI
Sbjct:  727 VGDDPWHDFCNVVWKI 742          
The following BLAST results are available for this feature:
BLAST of EY728806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ARFA_ARATH5.008e-6456.30Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ1.568e-4148.17Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ1.467e-3945.05Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ1.209e-1733.70Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFB_ARATH2.977e-1632.54Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFW_ORYSJ1.930e-1532.80Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI1.930e-1532.80Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFL_ARATH1.785e-1344.93Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFV_ARATH3.011e-1342.47Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFD_ARATH3.883e-1350.85Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-H02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728806 ID=EY728806; Name=EY728806; organism=Citrus sinensis; type=EST; length=820bp
CACGCGTCCGGGAAATCTCACGTTGAATCTTCAGCTTTCTCATACTGTGA
CTCACCGCAAGGACGCGACCTCTATCCATCACCTAAGTTTCCACTGCCAC
GAAGGGCAACCATTTTGGTTTGAGTGGAAATAAGTCACTGGCTGCTGTTT
CCAGCAACTCAATGTACTGGCCCAACCGTGCAGAAAATGTAACAGAATCA
TTTGCTCCAGTTGTGAACAAGGAATGCAGTGAAAAGAGACAGGGCAATGG
GAACACCTGCAGGCTATTTGGCATTCAGCTCGTTGACAACTCGAATGTAG
AAGAAGCTTCACCTGCTTTTACCATGTCTGGAGCAATGGGGGATGATCGA
GCAATTCCATGTTTAGATGCAGACTCTGACCAGCATTCTGAACCATCAAA
TATTAATCGATCTGACGTTCCTTCTGTAAGTTGTGATGCAGAGAAATCGT
GCCTGAGATCTCCTCAGGAGTCTCAAAGCAGGCAGATTCGAAGTTGCACA
AAGGTTCATATGCAAGGAATTGCAGTTGGGAGGGCTGTTGATTTGACACG
ATTTGACTGTTATGAAGACCTTCTCAAGAAACTGGAGGAGATGTNTGACA
TTGAGGGAGACCTGTGTGGATTCACCAAGAAGTGGCAAGTGGTCTACACT
GATGATGAAGATGACATGATGATGGGTGGGAGATGATCCATGGCATGAGT
TCTGTANCATGGTGAGGAAAATTTCATCTACACAGCAGAAGAAGTAAAAA
ACCTTGTCCCCAAGGTAAAACTCCAAGTTAACAGGAGCTCATGCCGGCAA
CCAAATGTTGAAGTGGTTGT
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