EY728798

Overview
NameEY728798
Unique NameEY728798
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11784 contig Csv1_Contig11784:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY728798 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 46/86 (53.49%), Postives = 53/86 (61.63%), Query Frame = 2 
Query:  548 DYMNYRKYRYLRLDGSSTIMDRRDMVRDF-HIXVIILFSC*VRKLVDWGIT*QLR---TLSFFMKVIGIHIGFTGMDRAHRLGQTR 793
            DYMNYRKY+YLRLDGSSTIMDRRDMVRDF H   I +F    R     G+   L    T+ F+       +    MDRAHRLGQT+
Sbjct: 1240 DYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA---GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTK 1322

HSP 2 Score: 69.3218 bits (168), Expect = 3.292e-11
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 3 
Query:   39 DSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEVFI 155
            DSGKLQTLDILLKRLRA NHRVLLFAQMTKMLNILE ++
Sbjct: 1204 DSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYM 1242

HSP 3 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  631 FPHXSDNFVFLLSTKAGGLGDYLTAADTVIFYESDWNPHW-IYRHGQSSPVGSNKDVS 801
            F H SD FVFLLST+AGGLG  LTAADTVIFYESDWNP   +    ++  +G  KDV+
Sbjct: 1268 FQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVT 1325
The following BLAST results are available for this feature:
BLAST of EY728798 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
INO80_ARATH1.746e-1253.49DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-G03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728798 ID=EY728798; Name=EY728798; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCCCACGCGTCCGCATACTTCTATGTAGGACTCTGGGAAG
CTTCAAACTCTTGATATATTATTGAAACGCTTGCGAGCGGAAAATCATCG
TGTTCTCTTGTTTGCTCAAATGACAAAAATGCTCAACATTCTTGAGGTAT
TTATAATTTTAACACAATGAACTTAATGGATTTTTCAATTTTCAATCTTT
TCATTTTCTAATTCATGCACATACACAAATTAAATTATCTCTTCAAGGTT
AGTGCGAGTTGGATTGGATCTCCTGACCTTTTGCTCTGCTGTTGAAATCA
AAGTAACTAAGCTTAATGCCTTGGGGACATTTTAAATCTGTCATTAACCT
AAATGCTAAATTACCTGATTAGCTTCTTGGGAATGGTGGGTTAAGAAATT
TCTATGACCCTGCCAAATTAATCCAGTGATTGAACTGTCATTTGAGTTTG
CTTCATTCTCTGATGTGGTCAATTAGAGTATTCTTATGTTTGGAGCTCCT
ATTGAGAAAGCATGTTGTAGTGCTAACTCTCTTGTNTACATTTCTAGGAT
TATATGAACTATAGGAAATACAGGTATCTCAGACTTGATGGATCCTCCAC
TATCATGGACCGGCGAGACATGGTCCGAGATTTCCACATANGAGTGATAA
TTTTGTTTTCTTGCTGAGTACGAAAGCTGGTGGACTGGGGGATTACTTGA
CAGCTGCGGACACTGTCATTTTTTATGAAAGTGATTGGAATCCACATTGG
ATTTACAGGCATGGACAGAGCTCACCGGTTGGGTCAAACAAGGATGTAAG
TTCTGGCTGAACTGTCATTATTTATTTTTTCATGAATGGGAATGGCTTCA
ATTGATTGTGATGTTAAAAACGCCATTTGGTCTTGTTATAA
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