EY728775

Overview
NameEY728775
Unique NameEY728775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9951 contig Csv1_Contig9951:47..514. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHL_STRCO (L-serine dehydratase OS=Streptomyces coelicolor GN=sdaA PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.640e-27
Identity = 69/156 (44.23%), Postives = 87/156 (55.77%), Query Frame = -3
Query:    2 IAFNWQHDLLL-LDESLPYHPNAMSLHAYGENGL-LSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPRRAAKLHRSLLEIGKPNVI 463
            IAF +  D++L   ++LPYH N M+L AY   G  +  +TYYSV                   +  L Y F +  ELL L  + GL +S LM+ NERAWR + EIR GLL IW VMR CV++G+  EGILPGGL V RRAA   R L   G P  +
Sbjct:  105 IAFAYDDDMVLHRRKALPYHANGMTLWAYDAEGAEVLTKTYYSVGGGFVVDEDAVGADRIVLDDTVLKYPFRTGDELLRLARETGLSISALMLENERAWRDEDEIREGLLEIWRVMRACVDRGMTREGILPGGLKVRRRAANTARKLRSEGDPQAL 260          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHL_ECOLI (L-serine dehydratase 1 OS=Escherichia coli (strain K12) GN=sdaA PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 8.787e-23
Identity = 55/136 (40.44%), Postives = 75/136 (55.15%), Query Frame = -3
Query:   14 SLPYHPNAMSLHAYGENGLLSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPRRAAKLHRSLLEIGK 421
            +LP H N M +HAY  + ++  +TYYS+                  +EV +PY F SA ELLA CN+ G  +S L M NE A  S  EI     H+W  M+ C+++G+  EG+LPG L VPRRA+ L R L+   K
Sbjct:  119 NLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQDA--ANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQACIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDK 252          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: TDCG_ECOLI (L-serine dehydratase tdcG OS=Escherichia coli (strain K12) GN=tdcG PE=1 SV=4)

HSP 1 Score: 104.76 bits (260), Expect = 1.958e-22
Identity = 65/148 (43.92%), Postives = 85/148 (57.43%), Query Frame = -3
Query:   26 PIAFNWQHDLLLLDESLPYHPNAMSLHAY-GENGLLSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPRRAAKLHRSLL 466
            P+A N    ++   E LP H N M + A+ G+  LLS+ TYYSV                   E  +PYDF SA ELL +C+ +GL +S LMM NE A RS AEI +G   IW VM + +E+G+  EG+LPG L+VPRRA  L R L+
Sbjct:  108 PVAKN----IIFHPEMLPRHENGMRITAWKGQEELLSK-TYYSVGGGFIVEEEHFGLSHDV--ETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLV 248          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHL_HAEIN (L-serine dehydratase OS=Haemophilus influenzae GN=sdaA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.894e-19
Identity = 52/146 (35.62%), Postives = 81/146 (55.48%), Query Frame = -3
Query:   29 IAFNWQHDLLLLDESLPYHPNAMSLHAYGENGL-LSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPRRAAKLHRSL 463
            + F+++++L+     L  H N M++ A  EN   L  QTYYS+                 T  VQ+PY + +A ++L  C+ +GL +S +M+ NE A      + + L ++W  M+ C+E G+  EGILPG L VPRRAA L+R+L
Sbjct:  105 VKFDFENNLIFHRTFLKLHENGMTITALDENRTELYRQTYYSIGGGFIVDEAHFGKEEKNT--VQVPYPYKNAEDILKHCSDNGLMLSTVMLENEIALNGKEAVSAHLENVWKTMQACIEHGIHTEGILPGPLRVPRRAASLYRAL 248          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHM_ECOLI (L-serine dehydratase 2 OS=Escherichia coli (strain K12) GN=sdaB PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.313e-18
Identity = 58/158 (36.71%), Postives = 85/158 (53.80%), Query Frame = -3
Query:   14 NWQHDLLL-LDESLPYHPNAMSLHAYGENGL----------LSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPRRAAKLHRSLLEIGK 454
            N QH++   +D+ + +H + +SLH   ENG+          +  QTYYS+                 ++ V++PY +SSA +L   C + GL +S LMM NE A  S  E+   L ++W VMR  +E+G+  EG+LPG L VPRRAA L R L+   K
Sbjct:  100 NGQHEVEFPVDQCMNFHADNLSLH---ENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQD--SAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRGGIERGISTEGVLPGKLRVPRRAAALRRMLVSQDK 252          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHL_MYCTU (L-serine dehydratase OS=Mycobacterium tuberculosis GN=sdaA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.229e-16
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = -3
Query:   50 DESLPYHPNAMSLHAYGENG-LLSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPRRA 427
            D  LP HPN M+  A G +G +L+ +TY+SV                    V LPY   SA ELL +C++  + +SE  + NE   R++ E+R+ LLH+  VM EC ++ +  EG+LPGGL V RRA
Sbjct:  117 DIVLPTHPNGMTFTAAGPHGRVLATETYFSVGGGFIVTEQTSGNSGQHPCSVALPY--VSAQELLDICDRLDVSISEAALRNETCCRTENEVRAALLHLRDVMVECEQRSIAREGLLPGGLRVRRRA 241          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHL_MYCBO (L-serine dehydratase OS=Mycobacterium bovis GN=sdaA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.229e-16
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = -3
Query:   50 DESLPYHPNAMSLHAYGENG-LLSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLRHEGILPGGLDVPRRA 427
            D  LP HPN M+  A G +G +L+ +TY+SV                    V LPY   SA ELL +C++  + +SE  + NE   R++ E+R+ LLH+  VM EC ++ +  EG+LPGGL V RRA
Sbjct:  117 DIVLPTHPNGMTFTAAGPHGRVLATETYFSVGGGFIVTEQTSGNSGQHPCSVALPY--VSAQELLDICDRLDVSISEAALRNETCCRTENEVRAALLHLRDVMVECEQRSIAREGLLPGGLRVRRRA 241          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHL_HELPY (L-serine dehydratase OS=Helicobacter pylori GN=sdaA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 48/147 (32.65%), Postives = 72/147 (48.98%), Query Frame = -3
Query:   29 IAFNWQHDLLLLDESLPYHPNAMSLHAYG-ENGLLSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLR-HEGILPGGLDVPRRAAKLHRSL 463
            I F++  DL+  ++ L  H NA+ L A+  +N +L E+TYYSV                      + YDFSSA ELL LC KH   ++E++   E A ++  +  + ++ I+  M EC + G    E  LPG L V R A  +   L
Sbjct:  104 IPFDYAKDLIFDNKPLTRHQNALILKAFNSKNEVLKEETYYSVGGGFVYTEKELDNLSEEDGNESIAYDFSSAKELLELCQKHQKSIAEIVRLRENALKNHPD--ATMVKIYHAMLECYDNGANSKERYLPGSLKVTRLAPSIKTRL 248          
BLAST of EY728775 vs. ExPASy Swiss-Prot
Match: SDHL_HELPJ (L-serine dehydratase OS=Helicobacter pylori J99 GN=sdaA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.133e-12
Identity = 48/147 (32.65%), Postives = 70/147 (47.62%), Query Frame = -3
Query:   29 IAFNWQHDLLLLDESLPYHPNAMSLHAYG-ENGLLSEQTYYSVXXXXXXXXXXXXXXXAPTSEVQLPYDFSSAVELLALCNKHGLRVSELMMANERAWRSDAEIRSGLLHIWSVMRECVEQGLR-HEGILPGGLDVPRRAAKLHRSL 463
            I F++  DL+  ++ L  H NA+ L A+  +N +L E+TYYSV                      + YDFSSA ELL LC KH   ++E++   E A ++  +  + +  I+  M EC   G    E  LPG L V R A  +   L
Sbjct:  104 IPFDYAKDLIFDNKPLARHQNALILKAFNAKNEVLKEETYYSVGGGFVYTEKELDNLSEEGENESVAYDFSSAKELLELCQKHQKSIAEIVRLRENALKNHPD--ATMTKIYHAMLECYHNGANSKERYLPGSLKVTRLAPSVKTRL 248          
The following BLAST results are available for this feature:
BLAST of EY728775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SDHL_STRCO2.640e-2744.23L-serine dehydratase OS=Streptomyces coelicolor GN... [more]
SDHL_ECOLI8.787e-2340.44L-serine dehydratase 1 OS=Escherichia coli (strain... [more]
TDCG_ECOLI1.958e-2243.92L-serine dehydratase tdcG OS=Escherichia coli (str... [more]
SDHL_HAEIN5.894e-1935.62L-serine dehydratase OS=Haemophilus influenzae GN=... [more]
SDHM_ECOLI1.313e-1836.71L-serine dehydratase 2 OS=Escherichia coli (strain... [more]
SDHL_MYCTU1.229e-1639.37L-serine dehydratase OS=Mycobacterium tuberculosis... [more]
SDHL_MYCBO1.229e-1639.37L-serine dehydratase OS=Mycobacterium bovis GN=sda... [more]
SDHL_HELPY4.833e-1332.65L-serine dehydratase OS=Helicobacter pylori GN=sda... [more]
SDHL_HELPJ3.133e-1232.65L-serine dehydratase OS=Helicobacter pylori J99 GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-D09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728775 ID=EY728775; Name=EY728775; organism=Citrus sinensis; type=EST; length=468bp
TGATGACGTTGGGCTTGCCGATTTCCAACAGGCTGCGGTGCAATTTCGCC
GCGCGCCGTGGCACATCCAGACCGCCGGGCAAGATGCCTTCGTGGCGCAG
GCCTTGCTCAACGCATTCGCGCATCACCGACCAGATATGCAGCAGGCCGC
TGCGGATCTCGGCGTCACTGCGCCAGGCCCGTTCGTTGGCCATCATCAGT
TCGGAAACCCGCAGGCCGTGCTTGTTGCACAAGGCCAGCAGTTCGACGGC
GCTGGAGAAGTCGTAAGGCAATTGCACTTCGCTGGTCGGCGCGATACCGG
ATTCAGCTTCCGCCGCTTCGATGATGAAACCGCCGCCCACCGAGTAGTAC
GTCTGCTCGCTCAACAGGCCGTTTTCGCCGTAGGCATGCAGGGACATGGC
GTTCGGGTGGTAGGGCAGGCTTTCGTCCAGCAGCAGGAGGTCGTGTTGCC
AGTTGAAGGCAATCGGCT
back to top