EY728743

Overview
NameEY728743
Unique NameEY728743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 5.755e-80
Identity = 155/232 (66.81%), Postives = 171/232 (73.71%), Query Frame = 2
Query:   59 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDESDDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H               FYPADDV K L+NKRKPKPTKLRASITPGTVLIIL GRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TST VDISGVNV++ DDKY  K+ E+K K G                    D  ++    L+KAIE V  LKA LGARFSL+AG+KPHEL F
Sbjct:    3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.574e-75
Identity = 148/233 (63.52%), Postives = 166/233 (71.24%), Query Frame = 2
Query:   56 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDESDDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            M  KQ  P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRH               FYPA+DV K L N+R  KPTKLRASITPGTVLIIL GRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTST VDISGV +D+ DDKY  K  E+KKK                      D  ++    L+KAIEAV  LK  LGARFSL+ G+KPHEL F
Sbjct:    1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.280e-75
Identity = 144/226 (63.72%), Postives = 165/226 (73.01%), Query Frame = 2
Query:   77 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDESDDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRH               FYPA+DV K LVN+RKPKPTKL+ASITPGTVLIIL GRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTST +DISGVN ++ DDKY  K  E+KKK                      +  ++    L+K+IEAV  LK  LGARFSL  G+KPHEL F
Sbjct:    8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.793e-73
Identity = 146/233 (62.66%), Postives = 164/233 (70.39%), Query Frame = 2
Query:   56 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKPTKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDESDDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            M  KQ   +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRH               FYPA+DV K L N+R  KP KLRASITPGTVLIIL GRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTST VDISGV +D+ DDKY  K  E+KKK                      D  ++    L+KAIEAV  LK  LGARFSL+ G+KPHEL F
Sbjct:    1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.938e-35
Identity = 102/262 (38.93%), Postives = 136/262 (51.91%), Query Frame = 2
Query:   65 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKP-----TKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDES-DDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIILTGR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TST +DISGV + E   D Y  K+  RK +                      D  ++    +++ I+AV  L+  L + F+L  G+ PH+L F
Sbjct:   34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEISEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 4.317e-35
Identity = 102/262 (38.93%), Postives = 136/262 (51.91%), Query Frame = 2
Query:   65 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKP-----TKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDES-DDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            K+GKP  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIILTGR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TST +DISGV + E   D Y  K+  RK +                      D  ++    +++ I+AV  L+  L + F+L  G+ PH++ F
Sbjct:   37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIFDTEREKYEITEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL6_CHILA (60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.641e-34
Identity = 103/273 (37.73%), Postives = 139/273 (50.92%), Query Frame = 2
Query:   32 AQQKRVASMAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKP-----TKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDES-DDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            A++  V +   K+G+P  SRNP L+RGIG++SRS MY ++ L+  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGTVLIILTGR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TST +DIS V + +   D Y  K+  RK +                      D  ++    ++  I+AV  L+  L + F+L  G+ PH+L F
Sbjct:   27 AKKANVKAKKSKKGQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKERYQISEQRKVD-QKAVDSQILPKIKAVPQLRGYLRSVFALTNGIYPHKLVF 288          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL6_HUMAN (60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.798e-34
Identity = 100/263 (38.02%), Postives = 135/263 (51.33%), Query Frame = 2
Query:   62 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA--------------------------KNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKP-----TKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDES-DDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            PK+GKP  SRNP L+RGIG++SRS MY ++ ++  K                           KNGG                    +YP +DV + L++  K KP      KLRASITPGT+LIILTGR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TST +DIS V + +   D Y  K+  RK +                      D  ++    ++  I+A+  L+  L + F+L  G+ PH+L F
Sbjct:   37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKID-QKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL6_MOUSE (60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 4.773e-34
Identity = 103/264 (39.02%), Postives = 135/264 (51.14%), Query Frame = 2
Query:   62 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKP-----TKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDES-DDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            PK+ KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIILTGR +GKRVVFLKQL SGLLLV+GP  IN VPLRR +Q +VI TST VDIS V + +   D Y  K+  RK +                      D  ++    ++  I+AV  L+  L ++FSL  G+ PH+L F
Sbjct:   44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296          
BLAST of EY728743 vs. ExPASy Swiss-Prot
Match: RL6_RAT (60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5)

HSP 1 Score: 141.739 bits (356), Expect = 5.278e-33
Identity = 106/285 (37.19%), Postives = 143/285 (50.18%), Query Frame = 2
Query:    5 ASAKLSFTEAQQKRVASMAPK--QGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNGGVFPRHXXXXXXXXXXXXXXXFYPADDV*KTLVNKRKPKP-----TKLRASITPGTVLIILTGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTTVDISGVNVDES-DDKYXAKEVERKKKTGXXXXXXXXXXXXXXXXXXXXDGSESC*CTLVKAIEAVXNLKACLGARFSLQAGVKPHELGF 754
            A+A  +      K+ +S A K  + KP  SRNP L+RGIG++SRS MY ++ L+  K                            KNGG                    +YP +DV + L++  K KP      +LR+SITPGTVLIILTGR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TST VDIS V + +   D Y  K+  RK +                      D  ++    ++  I+AV  L+  L ++FSL  G+ PH+L F
Sbjct:   25 ATAPRALPAGAVKKSSSKAKKLRKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIFDTEKEKYEITEQRKAD-QKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298          
The following BLAST results are available for this feature:
BLAST of EY728743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR5.755e-8066.8160S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL63_ARATH5.574e-7563.5260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL61_ARATH7.280e-7563.7260S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL62_ARATH1.793e-7362.6660S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6_PIG1.938e-3538.9360S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_BOVIN4.317e-3538.9360S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]
RL6_CHILA1.641e-3437.7360S ribosomal protein L6 OS=Chinchilla lanigera GN... [more]
RL6_HUMAN2.798e-3438.0260S ribosomal protein L6 OS=Homo sapiens GN=RPL6 P... [more]
RL6_MOUSE4.773e-3439.0260S ribosomal protein L6 OS=Mus musculus GN=Rpl6 P... [more]
RL6_RAT5.278e-3337.1960S ribosomal protein L6 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-008-A02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728743 ID=EY728743; Name=EY728743; organism=Citrus sinensis; type=EST; length=897bp
CCACGCGTCCGCGAAACTCTCATTCACAGAGGCACAGCAGAAGCGGGTAG
CATCAATGGCGCCGAAGCAAGGGAAGCCAAGAGTGAGCAGGAATCCGGAG
CTGATCCGAGGAATTGGAAAGTTCTCTCGTTCAAAGATGTACCATAAGAG
GGGTCTCTGGGCAATTAAAGCCAAAAACGGTGGCGTCTTTCCTCGTCACG
AACCCAAGCCCAAAGCCGCTGCTCCCGCCGAGAAACCCCCCAAGTTTTAC
CCCGCCGATGACGTCTAGAAAACACTCGTCAACAAGCGCAAGCCTAAACC
CACCAAACTTAGAGCAAGCATCACCCCAGGGACAGTGCTGATTATACTAA
CTGGAAGGTTCAAGGGTAAGAGAGTTGTGTTCCTGAAGCAGCTTCCATCT
GGGTTGCTTCTAGTTTCTGGGCCATTTAAGATCAATGGTGTGCCTTTACG
ACGTGTGAACCAGTCTTACGTGATTGGAACTTCTACCACAGTTGATATCT
CCGGAGTGAATGTGGATGAGTCTGATGATAAGTATNTTGCCAAGGAAGTC
GAGAGGAAGAAGAAGACAGGAGAGAATGAGTTCTTTGAGTCAGAGAAGAA
GGAGAAGGAGTCGCTTCCCTCGGAAAAGAAGGATGGATCCGAGTCTTGTT
GATGCACATTGGTCAAGGCCATTGAGGCGGTCCANAATTTGAAGGCTTGC
CTGGGTGCTAGGTTTTCCCTCCAGGCCGGGGTGAAACCTCATGAACTTGG
CTTCTGAAAAAGTGTTAGAACAATTAGGGATGGCTTGCCTTTGTCCTAAC
TGGTTAGGGTTGGTTGGGAAGTGATGTAACCGAGTGGAATGTTGTTTCAG
GGGAGGGGAGGTTGGATTGGGGTATGGTGTGGGGGGATGAAGAGGTG
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