EY728740

Overview
NameEY728740
Unique NameEY728740
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length922
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728740_ssr24 microsatellite EY728740_ssr24:24..38. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728740_ssr39 microsatellite EY728740_ssr39:39..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728740 vs. ExPASy Swiss-Prot
Match: BLC_CITFR (Outer membrane lipoprotein blc OS=Citrobacter freundii PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.398e-12
Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = 3 
Query:  150 KEMEVVRGLDIKRYMGRWYEIASFPSRNQPKNGAD-TRATYTLNEDGTVHVRNETWSDGKR--GSIEGTAY-KADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYIXYWEKATVKGMXVS 596
            K + VV   D KRY+G WYEIA F  R +   G D   ATY+L +DG ++V N+ ++  +      EG AY   DP +   K+                G Y V+ +D  Y++AL+  P R YLWIL R P + + +       AT +G  V+
Sbjct:   26 KGVTVVNNFDAKRYLGTWYEIARFDHRFE--RGLDKVTATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTGDPSTAALKVSFFGPFY---------GGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEMKQQMLAIATREGFEVN 167
[Close]
BLAST of EY728740 vs. ExPASy Swiss-Prot
Match: BLC_ECOLI (Outer membrane lipoprotein blc OS=Escherichia coli (strain K12) GN=blc PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 49/147 (33.33%), Postives = 69/147 (46.94%), Query Frame = 3 
Query:  162 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYIXYWEKATVKGMXVS 596
            VV   D KRY+G WYEIA F  R + +      ATY+L +DG ++V N+ ++   G     EG AY     +  A                  G Y V+ +D  Y++AL+  P R YLWIL R P + + +       AT +G  VS
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVS 167
[Close]
BLAST of EY728740 vs. ExPASy Swiss-Prot
Match: BLC_ECO57 (Outer membrane lipoprotein blc OS=Escherichia coli O157:H7 GN=blc PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.018e-11
Identity = 49/147 (33.33%), Postives = 69/147 (46.94%), Query Frame = 3 
Query:  162 VVRGLDIKRYMGRWYEIASFPSRNQPKNGADTRATYTLNEDGTVHVRNETWSD--GKRGSIEGTAYKADPKSDEAKLXXXXXXXXXXXXXXXXGNYWVLYIDDNYQYALIGEPTRKYLWILCREPHMDEAIYIXYWEKATVKGMXVS 596
            VV   D KRY+G WYEIA F  R + +      ATY+L +DG ++V N+ ++   G     EG AY     +  A                  G Y V+ +D  Y++AL+  P R YLWIL R P + + +       AT +G  VS
Sbjct:   30 VVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAA--------LKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVATREGFDVS 167
The following BLAST results are available for this feature:
BLAST of EY728740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BLC_CITFR1.398e-1233.99Outer membrane lipoprotein blc OS=Citrobacter freu... [more]
BLC_ECOLI2.018e-1133.33Outer membrane lipoprotein blc OS=Escherichia coli... [more]
BLC_ECO572.018e-1133.33Outer membrane lipoprotein blc OS=Escherichia coli... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-H11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728740 ID=EY728740; Name=EY728740; organism=Citrus sinensis; type=EST; length=922bp
CCACGCGTCCGCCCACGCGTCCGGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAACAGGAGCTAGTACTCATTCTGATAAACCCAAGCTCTGTTA
TTCCGAAAAGCAGATTGAAACTTTGTCAGCAAAAAAAATGGCCTCCAAGA
AAGAGATGGAAGTGGTGAGGGGTCTTGACATAAAGCGTTACATGGGGAGA
TGGTATGAGATAGCTTCATTTCCATCAAGGAATCAGCCCAAGAATGGAGC
GGATACGAGGGCTACTTACACTTTGAATGAAGATGGGACAGTGCATGTGC
GGAATGAGACATGGAGTGATGGCAAAAGAGGGTCCATCGAAGGCACTGCT
TACAAGGCTGATCCTAAGAGCGATGAGGCCAAGTTGAAGGTCAAGTTTTA
TGTGCCACCCTTTTTCCCCATCATCCCTGTTGTTGGCAACTACTGGGTTT
TGTATATTGATGATAATTATCAGTATGCTTTGATTGGTGAGCCTACCAGG
AAATATCTCTGGATTTTATGCAGGGAGCCTCATATGGATGAAGCGATCTA
CATCANCTATTGGGAGAAGGCTACAGTGAAGGGTATGANTGTGAGCAACT
GCNCAGAACACACAGAGTGATAACCCACAGAAGCAGAAGAAAGCCCCACG
ACACCCAAAGCTTTGGTGGGATCAATCCCTTTTCGGGAAATACCCTGTGA
ATTAATTTACCATATCCGGGATTCACCGTCCAGTTTAATTTCAATAAAAG
GGTAAAACCGGAACCCCCAACCCTAGAAGGGAACCAAGTGGCTGCCTCCC
GCTTTTGGTTTGGGGTGTGAAAAACCCTTGTTACAAACGGGTTGTTTTTG
GGTGTAAGAATTACCCCTCGAAATAAAATATGGGCCCTAATAAAAGAAAA
AGAGGGGAAAAAAAGGGGGGCT
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