EY728728

Overview
NameEY728728
Unique NameEY728728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: GLNE_PSEPK (Glutamate-ammonia-ligase adenylyltransferase OS=Pseudomonas putida (strain KT2440) GN=glnE PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.840e-42
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = -3
Query:  267 HLGTKSTPAGTAXNAFDPRVAFDLKQDAGGIVDMKFMVQYAALAWSAQHPSLXRYTDNIRILEGXEQVGXMPAADAHLXREVYKAYRSAAHRQALQNEAGTVAGDQFADERRQVQXIWHEXG 632
            +LGTK+T AGTA NAFD  V FD+KQDAGGIVD++FMVQYAALAWS  HP++ R+TDNIRILE  EQ   MPA+DA L REVYKA+RSA+HRQALQ EAG +   QFADERR+V+ IW E G
Sbjct:  854 NLGTKATAAGTAANAFDAGVPFDIKQDAGGIVDIEFMVQYAALAWSHDHPAILRWTDNIRILEELEQANLMPASDAVLLREVYKAFRSASHRQALQKEAGVIDAAQFADERREVRRIWGELG 975          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: GLNE_PSESM (Glutamate-ammonia-ligase adenylyltransferase OS=Pseudomonas syringae pv. tomato GN=glnE PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.919e-41
Identity = 81/122 (66.39%), Postives = 96/122 (78.69%), Query Frame = -3
Query:  267 HLGTKSTPAGTAXNAFDPRVAFDLKQDAGGIVDMKFMVQYAALAWSAQHPSLXRYTDNIRILEGXEQVGXMPAADAHLXREVYKAYRSAAHRQALQNEAGTVAGDQFADERRQVQXIWHEXG 632
            +LGT+ T AG A NAF+  V FDLKQDAGGIVD++FMVQYAALAWS +HP+L ++TDNIRILEG E+ G +P  DA L RE YKAYRSAAHRQALQ +AG V GDQF  +RR+V  IW + G
Sbjct:  862 NLGTRLTAAGRAANAFEASVPFDLKQDAGGIVDIEFMVQYAALAWSREHPALLQHTDNIRILEGLEEAGLLPDVDASLLREAYKAYRSAAHRQALQKQAGVVGGDQFHAQRREVMRIWAQMG 983          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: GLNE_PSEAE (Glutamate-ammonia-ligase adenylyltransferase OS=Pseudomonas aeruginosa GN=glnE PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.126e-38
Identity = 75/120 (62.50%), Postives = 92/120 (76.67%), Query Frame = -3
Query:  273 HLGTKSTPAGTAXNAFDPRVAFDLKQDAGGIVDMKFMVQYAALAWSAQHPSLXRYTDNIRILEGXEQVGXMPAADAHLXREVYKAYRSAAHRQALQNEAGTVAGDQFADERRQVQXIWHE 632
            +LGT++T AGTA NAF+   AFDLK DAGGIVD++FMVQYA LAWS +HP+L  +TDNIRILEG E+ G + + D  L +E YKAYR+AAHR ALQ EAG V+G+ F  ERR+V  IW E
Sbjct:  859 NLGTRATAAGTASNAFEATAAFDLKHDAGGIVDIEFMVQYAVLAWSGEHPALLEFTDNIRILEGLERAGLIASEDVRLLQEAYKAYRAAAHRLALQKEAGVVSGEHFQTERREVIRIWRE 978          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: RFAF_HAEIN (ADP-heptose--LPS heptosyltransferase 2 OS=Haemophilus influenzae GN=rfaF PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.802e-21
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = -2
Query:    1 MNILIVGPSWVGDMVMAQTLFQCLKQRHPDCQIDVLAPEWSRPILERMPEVRQALSFPLGHGALELAT 204
            MNILI+GPSWVGDM+M+ +L+Q LK ++P+C IDV+AP W +P+L RMPEVR+A+  PLGHGA EL T
Sbjct:    1 MNILIIGPSWVGDMMMSHSLYQQLKIQYPNCNIDVMAPNWCKPLLARMPEVRKAIEMPLGHGAFELGT 68          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: GLNE_NITOC (Glutamate-ammonia-ligase adenylyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=glnE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.516e-20
Identity = 48/97 (49.48%), Postives = 61/97 (62.89%), Query Frame = -3
Query:  279 FDLKQDAGGIVDMKFMVQYAALAWSAQHPSLXRYTDNIRILEGXEQVGXMPAADAHLXREVYKAYRSAAHRQALQNEAGTVAGDQFADERRQVQXIW 569
            FDLKQ  GGI D++F+VQY  LAW+  HP L  Y DNIRILEG  Q G + + ++ L  + Y+AYR+AA+R  LQ     V   QF  ER  VQ +W
Sbjct:  863 FDLKQGRGGIADIEFIVQYGVLAWAHAHPQLLEYPDNIRILEGFAQAGLLASEESQLLADAYRAYRAAANRLNLQTHEARVEEGQFRQERIAVQQLW 959          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: RFAF_SALTY (ADP-heptose--LPS heptosyltransferase 2 OS=Salmonella typhimurium GN=rfaF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    7 MNILIVGPSWVGDMVMAQTLFQCLKQRHPDCQIDVLAPEWSRPILERMPEVRQALSFPLGHGALEL 204
            M IL++GPSWVGDM+M+Q+L++ LK R+P   IDV+AP W RP+L RMPEV +A+  PLGHGALE+
Sbjct:    1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEI 66          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: RFAF_ECOLI (ADP-heptose--LPS heptosyltransferase 2 OS=Escherichia coli (strain K12) GN=rfaF PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 40/66 (60.61%), Postives = 54/66 (81.82%), Query Frame = -2
Query:    7 MNILIVGPSWVGDMVMAQTLFQCLKQRHPDCQIDVLAPEWSRPILERMPEVRQALSFPLGHGALEL 204
            M IL++GPSWVGDM+M+Q+L++ L+ R+P   IDV+AP W RP+L RMPEV +A+  PLGHGALE+
Sbjct:    1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEI 66          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: GLNE_HAHCH (Glutamate-ammonia-ligase adenylyltransferase OS=Hahella chejuensis (strain KCTC 2396) GN=glnE PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.420e-18
Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = -3
Query:  273 LGTKSTPAGTAXNAFDPRVAFDLKQDAGGIVDMKFMVQYAALAWSAQHPSLXRYTDNIRILEGXEQVGXMPAADAHLXREVYKAYRSAAHRQALQNEAGTVAGDQFADERRQVQXIWHE 629
            LGTK   +G+          FDLK D GGIVD++FMVQYAAL W+ ++P +  ++DNIRILE     G     DA    ++Y+  R+  HR ALQN    +  D+  +ERR V   W +
Sbjct:  848 LGTKPDSSGSPPY-------FDLKHDRGGIVDIEFMVQYAALRWANEYPQIVVWSDNIRILEALGDAGVFSQEDADKLCDIYRLLRAHGHRLALQNLPARIQTDELLEERRWVVAFWEK 959          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: GLNE_THISH (Glutamate-ammonia-ligase adenylyltransferase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=glnE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.049e-17
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = -3
Query:  279 FDLKQDAGGIVDMKFMVQYAALAWSAQHPSLXRYTDNIRILEGXEQVGXMPAADAHLXREVYKAYRSAAHRQALQNEAGTVAGDQFADERRQVQXIW 569
            F+LK+D GGI D++FMVQY  LA++  HP L  Y DNIRILE     G +P  DA    + Y+ +R+  HR  LQ     V   +FA++R  V+ +W
Sbjct:  865 FNLKRDPGGIADIEFMVQYWVLAYACDHPPLLDYPDNIRILERLVVTGVLPEEDARFLTDTYREFRNRIHRLTLQESDAVVDAAEFAEQRETVRALW 961          
BLAST of EY728728 vs. ExPASy Swiss-Prot
Match: GLNE_ERWCT (Glutamate-ammonia-ligase adenylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glnE PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.265e-16
Identity = 42/99 (42.42%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  273 FDLKQDAGGIVDMKFMVQYAALAWSAQHPSLXRYTDNIRILEGXEQVGXMPAADAHLXREVYKAYRSAAHRQALQNEAGTVAGDQFADERRQVQXIWHE 569
            FD+K DAGGI D++F+ QY  L ++AQ P L  ++DN+RILE   Q G M  ++A+  +  Y   R+  H  ALQ  +G V+ D+F  ER QV   W++
Sbjct:  848 FDIKTDAGGITDIEFITQYLVLRYAAQEPRLTHWSDNVRILELMAQYGVMEESEANALKLAYVTMRNELHHLALQELSGRVSKDRFVAEREQVLVSWNK 946          
The following BLAST results are available for this feature:
BLAST of EY728728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
GLNE_PSEPK1.840e-4269.67Glutamate-ammonia-ligase adenylyltransferase OS=Ps... [more]
GLNE_PSESM5.919e-4166.39Glutamate-ammonia-ligase adenylyltransferase OS=Ps... [more]
GLNE_PSEAE6.126e-3862.50Glutamate-ammonia-ligase adenylyltransferase OS=Ps... [more]
RFAF_HAEIN1.802e-2164.71ADP-heptose--LPS heptosyltransferase 2 OS=Haemophi... [more]
GLNE_NITOC1.516e-2049.48Glutamate-ammonia-ligase adenylyltransferase OS=Ni... [more]
RFAF_SALTY1.291e-1962.12ADP-heptose--LPS heptosyltransferase 2 OS=Salmonel... [more]
RFAF_ECOLI3.758e-1960.61ADP-heptose--LPS heptosyltransferase 2 OS=Escheric... [more]
GLNE_HAHCH2.420e-1841.18Glutamate-ammonia-ligase adenylyltransferase OS=Ha... [more]
GLNE_THISH2.049e-1743.30Glutamate-ammonia-ligase adenylyltransferase OS=Th... [more]
GLNE_ERWCT2.265e-1642.42Glutamate-ammonia-ligase adenylyltransferase OS=Er... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-G08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728728 ID=EY728728; Name=EY728728; organism=Citrus sinensis; type=EST; length=817bp
GGTCGCCAGTTCCAGCGCGCCATGGCCGAGCGGGAAGCTCAAAGCCTGAC
GCACCTCGGGCATACGCTCAAGAATCGGCCGGCTCCACTCGGGGGCGAGC
ACGTCGATTTGGCAGTCGGGATGGCGTTGTTTCAGGCACTGGAACAGTGT
CTGTGCCATCACCATGTCACCGACCCAACTGGGCCCAACGATCAGAATAT
TCATGTAGTTTCCACAAACGATACGGGGAGGCTCATGCCTCCCCGCCTTA
TATANTTTCANCTTANCCCCANTTCATGCCAAATTCNCTGCACCTGNCGC
CGTTCGTCAGCGAACTGATCCCCGGCAACGGTCCCGGCCTCGTTCTGCAA
GGCCTGGCGGTGAGCGGCGGAACGGTAGGCTTTATACACCTCGCGCANCA
AATGGGCATCGGCAGCGGGCATCANCCCGACCTGCTCCANCCCTTCCAGA
ATGCGGATATTGTCGGTGTANCGCANCAACGATGGATGTTGCGCAGACCA
CGCCAAAGCCGCGTATTGCACCATAAATTTCATATCGACGATACCTCCGG
CGTCCTGCTTGAGGTCGAACGCCACCCGTGGGTCGAAGGCATTCNCCGCC
GTTCCCGCCGGCGTGGACTTGGTACCGAGGTGGCGNNCATTCTGGCGCGC
ATTCGCCGAGCTCCTGNGGCAGTGGTGCAGGCCGTGNGCGGGGCGGGCGG
GGNNCGGGGCCCGCCNGANGGCGCGAACGTCCGCAGGCGTGGAGGCGGCG
CANGGCGGGGCNGGGGTGCGGGCCNTGGGCGCCGCGGGCGGNGGGGGGTT
GGTCCTTCGCGCCCGCG
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