EY728702

Overview
NameEY728702
Unique NameEY728702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728702_ssr305 microsatellite EY728702_ssr305:305..319. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728702 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.895e-39
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 2
Query:  380 MTLTLESIPGSSGYLDLFPDRRMSYXSNMYVLGLTVIAGIGGVLFGYDTGVISGGLLYIKNDYEAVNQISFLQETIVSMGLVGAIVGAASRGW 658
            MTLT+ + PGSSGYLD+FP+RRMSY  N Y+LGLTV AGIGG+LFGYDTGVISG LLYIK+D+E V Q SFLQETIVSM LVGA++GAA+ GW
Sbjct:    1 MTLTIPNAPGSSGYLDMFPERRMSYFGNSYILGLTVTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGW 93          

HSP 2 Score: 35.039 bits (79), Expect = 5.895e-39
Identity = 25/65 (38.46%), Postives = 31/65 (47.69%), Query Frame = 1
Query:  673 YGRKKAPXXXXXXXXXGAVKMGGASGSFVLILGRGL-SLAWEYGSVGRVPFIAELASDGVKGRMV 864
            YGRKKA          GA+ M  A   +VLI GR L  L     SV    +IAE +   V+G +V
Sbjct:   98 YGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAEASPSEVRGGLV 162          
BLAST of EY728702 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.925e-17
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 2
Query:  461 NMYVLGLTVIAGIGGVLFGYDTGVISGGLLYIKNDYEAVNQISFLQETIVSMGLVGAIVGAASRGW 658
            N YVL L   AGIGG+LFGYDTGVISG LLYI++D+++V++ ++LQE IVSM + GAIVGAA  GW
Sbjct:   25 NPYVLRLAFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGW 90          
BLAST of EY728702 vs. ExPASy Swiss-Prot
Match: INT4_ARATH (Inositol transporter 4 OS=Arabidopsis thaliana GN=INT4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.620e-16
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 2
Query:  467 YVLGLTVIAGIGGVLFGYDTGVISGGLLYIKNDYEAVNQISFLQETIVSMGLVGAIVGAASRGW 658
            Y++ L + AGIGG+LFGYDTGVISG LL+IK D++ V++ ++LQ TIVSM + GAIVGAA  GW
Sbjct:   26 YIMRLALSAGIGGLLFGYDTGVISGALLFIKEDFDEVDKKTWLQSTIVSMAVAGAIVGAAVGGW 89          

HSP 2 Score: 21.9422 bits (45), Expect = 1.620e-16
Identity = 17/69 (24.64%), Postives = 33/69 (47.83%), Query Frame = 1
Query:  673 YGRKKAPXXXXXXXXXGAVKMGGASGSFVLILGR-----GLSLAWEYGSVGRVPFIAELASDGVKGRMV 864
            +GR+ +          GA+ M  A   +V+I+GR     G+ +A    S+    +I+E +   ++G +V
Sbjct:   94 FGRRMSILIADVLFLIGAIVMAFAPAPWVIIVGRIFVGFGVGMA----SMTSPLYISEASPARIRGALV 158          
BLAST of EY728702 vs. ExPASy Swiss-Prot
Match: INT3_ARATH (Probable inositol transporter 3 OS=Arabidopsis thaliana GN=INT3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.217e-14
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 2
Query:  467 YVLGLTVIAGIGGVLFGYDTGVISGGLLYIKNDYEAVNQISFLQETIVSMGLVGAIVGAASRGW 658
            Y++ L + AGIGG+LFGY+TGVI+G LLYIK ++  V+  ++LQE IVSM + GAIVGAA  GW
Sbjct:   25 YIMRLALSAGIGGLLFGYNTGVIAGALLYIKEEFGEVDNKTWLQEIIVSMTVAGAIVGAAIGGW 88          
The following BLAST results are available for this feature:
BLAST of EY728702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
INT1_ARATH5.895e-3975.27Probable inositol transporter 1 OS=Arabidopsis tha... [more]
INT2_ARATH6.925e-1765.15Probable inositol transporter 2 OS=Arabidopsis tha... [more]
INT4_ARATH1.620e-1662.50Inositol transporter 4 OS=Arabidopsis thaliana GN=... [more]
INT3_ARATH3.217e-1459.38Probable inositol transporter 3 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728702 ID=EY728702; Name=EY728702; organism=Citrus sinensis; type=EST; length=896bp
CACGCGTCCGCGGAAGGAAAAATATTCCCCCAAACCTTCCCGAGAAAATT
TTTACGAACCAAATCAAATCTTTTCCTGCTCGCTTTACAAAGTTTTAAAG
CCTACAATTCAGCTCCCACTTAACGGAAAACAAAAACAGAAAACCTTCGT
CTCGGCAAAACGCCGCCGTTTAAATCGTTTAAAATTTTTCTATTCCTTGA
CATCGTCACTGTATCACCATCTTCTCATCTCAGCATTTCAAATTTTTACT
GAGTTTTTAATAATTTCCTTCAGATTTTTTTCATCAAACGGCAGAAGTTC
AATCCAATTCAATTCAATTAACTTGGCCTTCGGTTCATTTTGAATTAATC
AATCTCGTCCGTACGATTCGAGAGCAAAGATGACGTTGACGTTAGAGTCA
ATACCGGGAAGCTCAGGATACTTGGACTTGTTTCCCGATAGGAGGATGTC
GTATNTCAGTAATATGTATGTTCTTGGATTGACTGTTATCGCAGGCATTG
GCGGTGTGCTCTTCGGATATGACACTGGTGTCATATCAGGAGGCCTTCTG
TATATAAAAAATGATTATGAGGCAGTTAATCAGATTAGTTTCCTGCAGGA
AACAATAGTCAGCATGGGCTTGGTTGGTGCGATAGTTGGGGCTGCATCCA
GGGGGTGGGATGAATGATTGTTTATGGACGTAAGAAAGCACCACTTCTGC
TGATGGTGTCTTTACTGCTGGGAGCCGTGAAAATGGGTGGTGCGTCCGGA
TCATTTGTTCTCATACTGGGAAGGGGGTTGAGTTTGGCCTGGGAGTATGG
TAGCGTCGGTAGGGTCCCGTTTATCGCTGAACTCGCCTCCGATGGGGTGA
AAGGGAGGATGGTCTGTAGCGCGTGGTGTAGTGTGTAACACGGGAG
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