EY728668

Overview
NameEY728668
Unique NameEY728668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_HUMAN (Methylthioribose-1-phosphate isomerase OS=Homo sapiens GN=MRI1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.781e-22
Identity = 55/154 (35.71%), Postives = 80/154 (51.95%), Query Frame = 2
Query:  170 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISK-XXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYGGRCLSNR 628
            +L++I Y RGSLQ+LDQ  LP ++ Y  +      W AIR M VRG             VE+       G AA   +F+ DKL +LV++RPTAVN++ AA  L ++ ++         ++V +  I   E ML  D+  N++IG  G R L  R
Sbjct:    2 TLEAIRYSRGSLQILDQLLLPKQSRYEAVGSVHQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAA-LVAFVRDKLSFLVTARPTAVNMARAARDLADVAAREAEREGATEEAVRERVICCTEDMLEKDLRDNRSIGDLGARHLLER 154          

HSP 2 Score: 45.4394 bits (106), Expect = 3.781e-22
Identity = 25/64 (39.06%), Postives = 35/64 (54.69%), Query Frame = 3
Query:  621 RIELRNSXCSCLTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALEL 812
            R+       + LTHCNTG    +  +   LGVIR+LH  G +E A+C+ +   +QG R  A EL
Sbjct:  154 RVAPSGGKVTVLTHCNTGALATAG-YGTALGVIRSLHSLGRLEHAFCTETRPYNQGARLTAFEL 216          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_BOVIN (Methylthioribose-1-phosphate isomerase OS=Bos taurus GN=MRI1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.834e-21
Identity = 55/155 (35.48%), Postives = 80/155 (51.61%), Query Frame = 2
Query:  170 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIIS-KXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYGGRCLSNRA 631
            +L++I Y RGSLQ+LDQ  LP ++ Y  +      W AIR M VRG             VE+       G AA   +F+ D L +LV++RPTAVN++ AA  L ++ + +        ++V +  I  AE ML  D+  N++IG  G   L  RA
Sbjct:    2 TLEAIRYSRGSLQILDQLLLPQQSRYEAVGSVRQAWEAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAA-LVAFVQDALSFLVTARPTAVNMARAARDLADLAAQEAEREGATEEAVRERVICWAEDMLDKDLRDNRSIGDLGAHHLLKRA 155          

HSP 2 Score: 44.669 bits (104), Expect = 6.834e-21
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALEL 812
            LTHCNTG    +  +   LGVIR+LH  G +E A+C+ +   +QG R  A EL
Sbjct:  165 LTHCNTGALATAG-YGTALGVIRSLHNLGRLEHAFCTETRPYNQGARLTAFEL 216          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_MOUSE (Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.007e-18
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 2
Query:  170 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIIS-KXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYGGRCL 619
            +L++I Y  GSLQ+LDQ +LP    Y  +        AIR M VRG             VE+       G AA   +F+ D+L  LV++RPTAVN++ AA  L ++ + +        ++V +  I  AE ML  D+  N++IG  G R L
Sbjct:    2 TLEAIRYSPGSLQILDQLQLPEHCHYEALSSVQQASEAIRAMKVRGAPAIALVGCLSLAVELRAGAGGPGLAA-LVAFVRDQLRLLVAARPTAVNMARAARDLGQVAAQEAEREGATEETVRERVIRFAEDMLEKDLKDNRSIGDLGARHL 151          

HSP 2 Score: 45.0542 bits (105), Expect = 1.007e-18
Identity = 24/60 (40.00%), Postives = 33/60 (55.00%), Query Frame = 3
Query:  633 RNSXCSCLTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALEL 812
            R    + LTHCNTG    +  +   LGVIR+LH  G +E  +C+ +   +QG R  A EL
Sbjct:  158 RGGKVTVLTHCNTGALATAG-YGTALGVIRSLHEMGRLEHTFCTETRPYNQGARLTAFEL 216          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_RAT (Methylthioribose-1-phosphate isomerase OS=Rattus norvegicus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.215e-18
Identity = 52/150 (34.67%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  173 LQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISK-XXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYGGRCL 619
            L++I Y  GSLQ+LDQ +LP    Y  +        AIR M VRG             VE+       G AA   +F+ D+L  LV++RPTAVN++ AA  L  + ++         ++V +  I  AE ML  D+  N++IG  G R L
Sbjct:    3 LEAIRYSPGSLQILDQLQLPEHCHYETLSSVQQAREAIRAMKVRGAPAIALVGCLSLAVELQAGAGGPGLAA-LVAFVRDQLSLLVAARPTAVNMARAARDLTHMAAREAELEGATEETVRERVIRFAEDMLEKDLKDNRSIGDLGARHL 151          

HSP 2 Score: 45.0542 bits (105), Expect = 2.215e-18
Identity = 24/60 (40.00%), Postives = 33/60 (55.00%), Query Frame = 3
Query:  633 RNSXCSCLTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALEL 812
            R    + LTHCNTG    +  +   LGVIR+LH  G +E  +C+ +   +QG R  A EL
Sbjct:  158 RGGKVTVLTHCNTGALATAG-YGTALGVIRSLHEMGRLEHTFCTETRPYNQGARLTAFEL 216          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_THISH (Methylthioribose-1-phosphate isomerase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=mtnA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.482e-16
Identity = 53/148 (35.81%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  167 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEA-AEIMLRDDVATNKAIGSYG 607
            ++++++ +   SL+LLDQR+LP ET+YL+I D      AIREMVVRG             +    L A +    DA   L   LE L +SRPTAVNL  A A+++ +I +         +   A +EA A  +  DD+A N+ +G  G
Sbjct:    9 DTVRAVLWDGTSLKLLDQRRLPRETVYLDIPDVGAAADAIREMVVRGAPAIGITAAYGVVLAARRLPADTPDWLDA---LTPDLERLAASRPTAVNLFWALARMKSVIGQ-------VGADLPARLEAEARRIHEDDLADNRRMGELG 146          

HSP 2 Score: 35.4242 bits (80), Expect = 5.482e-16
Identity = 23/63 (36.51%), Postives = 33/63 (52.38%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKD--PVRLL 836
            LTHCNTG       +   LGVIR+ + +  +++ Y   +    QG R  A EL +D  PV L+
Sbjct:  157 LTHCNTGSLATGG-YGTALGVIRSAYGQQRIKKVYADETRPWLQGARLTAWELVQDGIPVDLI 218          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFA (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa GN=mtnA PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.114e-14
Identity = 44/135 (32.59%), Postives = 65/135 (48.15%), Query Frame = 2
Query:  203 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYG 607
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S             QA    AE + R+D+  N+ +G+YG
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRALIVRGAPAIGIVAGWGAVLAAREIEAVDG--IEALRKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWR------QAMAREAESIAREDLTANRCMGAYG 151          

HSP 2 Score: 34.6538 bits (78), Expect = 6.114e-14
Identity = 21/58 (36.21%), Postives = 28/58 (48.28%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            LTHCNTG    +      LGVIRA   +G + R +   +    QG R    EL +D +
Sbjct:  162 LTHCNTGSLATAGFGTA-LGVIRAGIAQGRIARVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_ALHEH (Methylthioribose-1-phosphate isomerase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=mtnA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.949e-14
Identity = 46/153 (30.07%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  164 SNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIML-RDDVATNKAIGSYGGRCL 619
            +++++++ ++   L+LLDQR+LP ET++L+   +AD   AIR+MVVRG             V +    A +   AD  + +   L  L S+RPTAVNL  A  ++Q+++               A +EAA + +  DD+  N+ +G  G   +
Sbjct:    4 NDTVRALDWQGDHLKLLDQRRLPAETVWLDCHSAADTADAIRDMVVRG--APAIGIAAAYGVVLAARAAMARRPADWPAAMAADLARLRSARPTAVNLFWALDRMQQVVDSDPADPL-------AALEAAAVAIHEDDLTANRRMGELGAHLI 147          

HSP 2 Score: 32.3426 bits (72), Expect = 7.949e-14
Identity = 24/63 (38.10%), Postives = 29/63 (46.03%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKD--PVRLL 836
            LTHCNTG       +   LGVIR+      +   Y   +    QG R  A EL  D  PVRL+
Sbjct:  154 LTHCNTGSLATGG-YGTALGVIRSAWSGKGLSAVYADETRPWLQGARLTAWELVADGIPVRLI 215          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_XYLFM (Methylthioribose-1-phosphate isomerase OS=Xylella fastidiosa (strain M12) GN=mtnA PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 4.956e-13
Identity = 43/135 (31.85%), Postives = 64/135 (47.41%), Query Frame = 2
Query:  203 LQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYG 607
            L+LLDQRKLP    Y+E   S D   AIR ++VRG             +    + A  G   +A   L   L+ L ++RPTAVNL+   A+++  +S             Q     AE + R+D+  N+ +G+YG
Sbjct:   25 LKLLDQRKLPFVVEYVECHSSEDVTQAIRTLIVRGAPAIGIVAGWGAVLAAREIEAVDG--IEALRKLEPALQRLHAARPTAVNLAWVLARMRRTLSAAHADWR------QVMECEAESIAREDITANRCMGAYG 151          

HSP 2 Score: 34.6538 bits (78), Expect = 4.956e-13
Identity = 21/58 (36.21%), Postives = 28/58 (48.28%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            LTHCNTG    +      LGVIRA   +G + R +   +    QG R    EL +D +
Sbjct:  162 LTHCNTGSLATAGFGTA-LGVIRAGIAQGRIARVFAGETRPWLQGARLTVWELQQDGI 218          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_XENTR (Methylthioribose-1-phosphate isomerase OS=Xenopus tropicalis GN=mri1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 58/185 (31.35%), Postives = 87/185 (47.03%), Query Frame = 2
Query:  170 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASFLG---DKLEYLVSSRPTAVNLSDAAAKLQEIISK-XXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYGGRCLSNRAQKFXMLLSYSLQHWAGWQQLDMGTALG 712
            SL+S+ Y RGSLQ+L+Q  LP ++ Y  +     G  AIR M VRG             VE+      S T  D  SF+    + L +LV +RPTAVN+  AA +L   ++K           + ++ I+ AE +L+ DV  N+ IG +G + +   A     +   +  +         GTALG
Sbjct:    2 SLESVRYSRGSLQVLNQLLLPHKSEYEPVTGVQQGADAIRTMKVRGAPAIAIVGVLSLAVELT-----SRTCQDVPSFIAFVQESLCHLVDARPTAVNMKKAADELNAFLAKEAEKAGATTQGLAESVIQWAEALLKKDVEDNQMIGDFGAKHILETAGPTEKVCMLTHCNTGSLATAGYGTALG 181          
BLAST of EY728668 vs. ExPASy Swiss-Prot
Match: MTNA_METCA (Methylthioribose-1-phosphate isomerase OS=Methylococcus capsulatus GN=mtnA PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.086e-12
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  167 NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWS-AIREMVVRGXXXXXXXXXXXXXVEVCNLNAFSGTAADAASF---LGDKLEYLVSSRPTAVNLSDAAAKLQEIISKXXXXXXXXDSVFQAYIEAAEIMLRDDVATNKAIGSYGGRCL 619
            +++Q++ +  G L++LDQR LP + +Y +I D+A G + AI  M VRG                  L A +  A D A +   + D +  L  SRPTAVNL  A  +++E ++         D V  A + AA  +  DD+A N A+G  G   L
Sbjct:   10 SAVQALKWSDGGLEVLDQRLLPGDVVY-QIFDTAAGVAEAIASMRVRGAPAIGIAAAYGVV-----LGARAAYARDPAHWKRAVEDDIAVLARSRPTAVNLFWALERMREAMA-----AIEGDPV-PALLAAARRIHEDDLAANLAMGELGAAIL 152          

HSP 2 Score: 43.1282 bits (100), Expect = 1.086e-12
Identity = 24/58 (41.38%), Postives = 31/58 (53.45%), Query Frame = 3
Query:  654 LTHCNTGQAGNSWIWVRPLGVIRALHPEGVVERAYCSXSGALSQGPRSPALELGKDPV 827
            LTHCNTG       +   LGVIR+    G +ER Y + +   SQG R    ELG+D +
Sbjct:  159 LTHCNTGALATGG-YGTALGVIRSTWRRGALERVYATETRPWSQGARLTVWELGQDRI 215          
The following BLAST results are available for this feature:
BLAST of EY728668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MTNA_HUMAN3.781e-2235.71Methylthioribose-1-phosphate isomerase OS=Homo sap... [more]
MTNA_BOVIN6.834e-2135.48Methylthioribose-1-phosphate isomerase OS=Bos taur... [more]
MTNA_MOUSE1.007e-1834.44Methylthioribose-1-phosphate isomerase OS=Mus musc... [more]
MTNA_RAT2.215e-1834.67Methylthioribose-1-phosphate isomerase OS=Rattus n... [more]
MTNA_THISH5.482e-1635.81Methylthioribose-1-phosphate isomerase OS=Thioalka... [more]
MTNA_XYLFA6.114e-1432.59Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_ALHEH7.949e-1430.07Methylthioribose-1-phosphate isomerase OS=Alkalili... [more]
MTNA_XYLFM4.956e-1331.85Methylthioribose-1-phosphate isomerase OS=Xylella ... [more]
MTNA_XENTR9.364e-1331.35Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_METCA1.086e-1232.26Methylthioribose-1-phosphate isomerase OS=Methyloc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-007-A02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728668 ID=EY728668; Name=EY728668; organism=Citrus sinensis; type=EST; length=838bp
CACGCGTCCGCGGACGCGTGGGTGTATAACAGACATACACTCACTTATAT
ACTGTTTTTTCAGCGAATCATTGGTAATATTTGCGTCAGCTTCTGCGAAG
CGAGATCGTAAAGTAGCCGCAAGAGAGTGAAAACAGATGGCTCTTGATTC
CGTTTCGATCGACAGCAACTCTCTTCAGTCCATTTGCTACAGGCGTGGCT
CCCTTCAGCTTCTCGACCAGAGAAAGCTTCCTCTGGAAACTATTTATTTG
GAAATTCGCGATTCTGCCGATGGATGGTCTGCAATACGGGAAATGGTGGT
GCGGGGGGCGCCTGCCATTGCTATAGCAGCGGCACTTTCCCTGGCAGTGG
AGGTGTGTAATTTGAATGCATTTAGTGGGACTGCTGCCGATGCAGCTTCA
TTTCTTGGCGATAAGTTGGAATATCTTGTCTCTAGTCGACCGACTGCAGT
GAATCTTTCAGATGCTGCCGCAAAACTCCAAGAAATCATATCAAAGGCTG
CCGCTACTGCTTCANAAGCCGATAGTGTATTTCAGGCCTACATAGAAGCT
GCTGAAATTATGCTCAGAGATGATGTGGCTACAAACAAAGCTATTGGTTC
TTATGGGGGCAGGTGTCTTTCGAATCGAGCTCAGAAATTCTANATGCTCC
TGTCTTACTCATTGCAACACTGGGCAGGCTGGCAACAGCTGGATATGGGT
ACGGCCCTTGGGTGTGATCCGTGCACTTCATCCTGAGGGGGTGGTAGAAA
GAGCTTATTGCTCTGNAAGCGGTGCGTTGAGCCAGGGACCACGAAGCCCG
GCGTTGGAGTTGGGTAAGGATCCGGTACGGCTACTCTT
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