EY728653 | Citrus Genome Database

Overview


Name	EY728653
Unique Name	EY728653
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	908

Libraries


Library Name	Type
Sweet orange fruit, development stadium (5 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY728653_ssr85	microsatellite	EY728653_ssr85:85..96.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

BLAST of EY728653 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.308e-19
Identity = 42/50 (84.00%), Postives = 48/50 (96.00%), Query Frame = 1

Query:  343 MQIFVKTLTGKTITLEVESSDTIDNVKATMQDEEGIPPDEQRLMFAGETI 492
            MQIFVKTLTGKTITLEVESSDTIDNVKA +QD+EGIPPD+QRL+FAG+ +
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50

HSP 2 Score: 27.7202 bits (60), Expect = 6.308e-19
Identity = 14/27 (51.85%), Postives = 17/27 (62.96%), Query Frame = 2

Query:  482 GKQLEDGRTLAGFRRQDGVGVECVVML 562
            GKQLEDGRTLA +  Q    +  V+ L
Sbjct:   47 GKQLEDGRTLADYNIQKESTLHLVLRL 73

The following BLAST results are available for this feature:

BLAST of EY728653 vs. ExPASy Swiss-Prot

BLAST of EY728653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75


Match Name	E-value	Identity	Description
UBIQ_WHEAT	6.308e-19	84.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	6.308e-19	84.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	6.308e-19	84.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	6.308e-19	84.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	6.308e-19	84.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	6.308e-19	84.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	6.308e-19	84.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	6.308e-19	84.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	6.308e-19	84.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	6.308e-19	84.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-704-006-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY728653 ID=EY728653; Name=EY728653; organism=Citrus sinensis; type=EST; length=908bp
CACGCGTCCGGGAGGAGCAGGAGGCCCAGCCGGACGGTTAATTATCGTCG
ATAAAATGAAAGCCTTTATAAATAACTAAGCCGAAGGAGGAGGAGGGGGA
GGAACAAAGACTTAGAAAAAGGAGAAGATCGTAATTTTACTCTACCCAGA
GTTGAAAATCTTGAAACTCGGCGGCGATTTTGAGTTAAAGAAGAGGCAGG
TTCCAGGGAAAAGATTTGGCTCTGGAGGTGGCACGGCATAGCCTTTTTAA
ATAAAGACACTGAGTTTCTTTCTTTTTCTGTCTTCAAAGCTTCACCTTTT
TTTCTCAAAGAAGAAGAGTGGGGGAAAAGAAATCAAAGCAGTATGCAGAT
CTTTGTGAAGACTTTGACTGGGAAGACAATTACTCTTGAGGTTGAGAGCA
GTGACACCATCGATAATGTTAAGGCTACGATGCAGGACGAGGAAGGGATT
CCTCCGGATGAGCAGAGATTGATGTTTGCTGGGGAAACAATTGGAAGATG
GCCGTACTCTGGCTGGATTTCGGCGTCAGGACGGTGTGGGGGTTGAGTGT
GTCGTGATGCTCTCGGGAGGAGCACTGATCAGGTGTGCGGGTGCCGGGGG
GTGAGCGCGCGGGCGAGGTTGTGAGGTGGGGAGGCGGTGCGGAGTGGGTT
GGCGGGTGGGGGTGGGGCTGAGTGGGGGTGGTGGTTCGGTTGGGGGGGGT
TGGTGTTTGTGCGGCAGGCAGGTGTGCGTTTTGTGTGACTGAGAAGGGTG
CCCTTTTCGCTGCGGGGTGGGGTGGCGGATGGGTTAGTGAGAGACTGAGG
TCTCAGTGTGGCGCGGTTTGCTGGCGCCGGTTGTGCTGGTGCTTCTGTGG
AGTTTGATAGCGCGTCGCGGCCGACGCGGACGTCTCTGTCTATGCCTCGC
GTGTATCT