EY728648

Overview
NameEY728648
Unique NameEY728648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728648_ssr503 microsatellite EY728648_ssr503:503..514. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.007e-31
Identity = 74/141 (52.48%), Postives = 87/141 (61.70%), Query Frame = 3
Query:   81 MCGGALIADYDEVRPVRRERKLTSEDLWSEF--GSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            MCGGA+I+DY  +    + RKLT+E+LWSE    +  D  G     K HP   + VK E  +    + A   GK +K    RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT            K+IRGDKAKLNF
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEAVK---KEQATEPGKRRK----RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNF 134          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.056e-20
Identity = 61/139 (43.88%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   81 MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            MCGGA+I+D+                +WS+  S    LG   + K   ++P+ V  E+           +GK     R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF T             +IRG KAKLNF
Sbjct:    1 MCGGAIISDF----------------IWSKSESEPSQLGSVSSRKK--RKPVSVSEER-----------DGK-----RERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.349e-19
Identity = 66/183 (36.07%), Postives = 80/183 (43.72%), Query Frame = 3
Query:   81 MCGGALIADYDEVRPVRRERKLTSEDLW-----------------SEFGSISDLLGLDYNGKSHPKQ------------------------PLKVKNEKAEDS--SNKAARVEGK-EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            MCGGA+I+D+    P  R R++TSE +W                 S F         D+ G                              P    +  AE S    K   ++G  EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T            +RIRG KAK+NF
Sbjct:    1 MCGGAIISDFI---PPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.323e-18
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  300 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+            +RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.340e-18
Identity = 44/70 (62.86%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  288 EGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T            +RIRG KAK+NF
Sbjct:  114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  288 EGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            +GK+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT            KRIRG KAKLNF
Sbjct:   16 DGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.396e-16
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = 3
Query:  258 EDSSNKAARVEGKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T             R RG+KAKLNF
Sbjct:   59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.381e-16
Identity = 50/106 (47.17%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  294 KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRIETIGTPPAPAP 611
            +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+T               RG KAKLNF              +  PSP  +  RI  I TPP+P P
Sbjct:   60 QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPP 156          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.000e-14
Identity = 37/60 (61.67%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  318 RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T             R RG KAKLNF
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
BLAST of EY728648 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 36/61 (59.02%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  315 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 497
            +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
The following BLAST results are available for this feature:
BLAST of EY728648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RAP23_ARATH2.007e-3152.48Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH6.056e-2043.88Ethylene-responsive transcription factor ERF071 OS... [more]
RA212_ARATH1.349e-1936.07Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ3.323e-1865.15Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH4.340e-1862.86Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF73_ARATH3.674e-1761.43Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH1.396e-1653.75Ethylene-responsive transcription factor ERF110 OS... [more]
EF112_ARATH2.381e-1647.17Ethylene-responsive transcription factor ERF112 OS... [more]
RAP26_ARATH1.000e-1461.67Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF115_ARATH2.229e-1459.02Ethylene-responsive transcription factor ERF115 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-F08-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728648 ID=EY728648; Name=EY728648; organism=Citrus sinensis; type=EST; length=841bp
CCACGCGTCCGGCAACCTTTGTTTCTTCCTCAAAAACTTTCTCATCCCAA
CACACAAATTAGAAGAGAAGAAAAAATAATATGTGTGGCGGTGCACTTAT
TGCTGATTATGATGAAGTCCGGCCGGTCAGGCGCGAGCGCAAATTGACCT
CCGAGGATCTCTGGTCCGAGTTTGGTTCCATTTCCGACCTCTTGGGCTTG
GACTACAATGGCAAATCCCACCCTAAGCAACCTCTCAAAGTGAAAAATGA
GAAGGCTGAAGATTCAAGCAATAAAGCTGCTCGTGTTGAGGGGAAGGAGA
AGAAGACTCAGCGAGTTCGCAAGAACGTGTACAGAGGAATACGGCAGAGG
CCGTGGGGAAAATGGGCAGCTGAAATTAGAGACCCTTACAAGGGCGTCCG
CGTTTGGCTCGGCACTTTCAACACAGCCGAAGAAGCCGCAAGAGCTTATG
ATGAAGCCGCCAAGCGTATCCGCGGCGACAAGGCCAAGCTCAACTTCGCT
CAGCCGCCGCCGCCAATAGCTCCACCCCCAGCTAAGAAACGCTGCATGCC
ATCCCCTGAGTTGACTCAGCCGAGAATTGAAACCATCGGAACCCCACCGG
CTCCGGCGCCGTCCCGTGGGTGGGGTTTGGGTATCANAATGAGTTTTATC
ACCCAGGGGCATGAGACAGGAGTTTGAGCTGAACCAGCGAATTTCGAGCT
TGGGAACGGTTTTGGGATTGGACCCTTNATGAGTCCGCCGAGTGGAACGG
GGCCGGGGGGTGATAATCGGGGCATTTTGGATGCTTGATGAGTGGGGGGG
AATCAGGAGTGAAGAGGATCGCTCTTGGTGTGGGGAAAAGA
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