EY728616

Overview
NameEY728616
Unique NameEY728616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length472
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1..471. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.302e-44
Identity = 83/107 (77.57%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLPTATLDGPATP 321
            RR +M TMR+T+GL+GF KR ES HD FG GHSST+ISAGLGMAV RD+ GKNNNV++VIGDGAMT GQAYEAMNNAG+LDS++IV+LNDNKQVSLPTATLDGP+ P
Sbjct:  157 RRGKMPTMRQTNGLSGFTKRGESEHDCFGTGHSSTTISAGLGMAVGRDLKGKNNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPSPP 263          

HSP 2 Score: 25.409 bits (54), Expect = 4.302e-44
Identity = 12/27 (44.44%), Postives = 17/27 (62.96%), Query Frame = 2
Query:  374 RELR*GRQNPPKPLGGPTPEVPARVDE 454
            RELR   +   K +GGP  ++ A+VDE
Sbjct:  281 RELREVAKGMTKQIGGPMHQLAAKVDE 307          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.240e-43
Identity = 81/107 (75.70%), Postives = 96/107 (89.72%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLPTATLDGPATP 321
            RR +M+T+R+T+GLAGF KR ES +D FG GHSST+ISAGLGMAV RD+ G+NNNVI+VIGDGAMT GQAYEAMNNAG+LDS++IV+LNDN+QVSLPTATLDGP  P
Sbjct:  156 RREKMSTLRQTNGLAGFTKRSESEYDCFGTGHSSTTISAGLGMAVGRDLKGRNNNVIAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNRQVSLPTATLDGPVPP 262          

HSP 2 Score: 26.5646 bits (57), Expect = 1.240e-43
Identity = 13/27 (48.15%), Postives = 17/27 (62.96%), Query Frame = 2
Query:  374 RELR*GRQNPPKPLGGPTPEVPARVDE 454
            RELR   +   K +GGP  E+ A+VDE
Sbjct:  280 RELREVAKGVTKQIGGPMHELAAKVDE 306          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 1.896e-41
Identity = 80/107 (74.77%), Postives = 94/107 (87.85%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLPTATLDGPATP 321
            RR +M TMR+T+GL+GF KR ES +D+FG GHSST+ISA LGMAV RD+ G  NNV++VIGDGAMT GQAYEAMNNAG+LDS++IV+LNDNKQVSLPTATLDGPA P
Sbjct:  153 RRDKMPTMRQTNGLSGFTKRSESEYDSFGTGHSSTTISAALGMAVGRDLKGGKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQVSLPTATLDGPAPP 259          

HSP 2 Score: 23.8682 bits (50), Expect = 1.896e-41
Identity = 12/27 (44.44%), Postives = 16/27 (59.26%), Query Frame = 2
Query:  374 RELR*GRQNPPKPLGGPTPEVPARVDE 454
            RELR   +   K +GG   E+ A+VDE
Sbjct:  277 RELREVAKGVTKQIGGSVHELAAKVDE 303          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.132e-31
Identity = 67/97 (69.07%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLP 291
            RR RM TMR+  GL+GF +R ES +D FGAGHSSTSISA LGMAVARD+ G  NNVI+VIGDGAM+ GQAYEAMNNAG   S LIV+LNDN     P
Sbjct:   95 RRGRMRTMRQGGGLSGFTRRSESEYDPFGAGHSSTSISAALGMAVARDLKGATNNVIAVIGDGAMSAGQAYEAMNNAGAAGSRLIVILNDNDMSIAP 191          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_RHOPT (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain TIE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.470e-30
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLP 291
            RR R+ T+R   GL+GF KR ES HD FGAGHSSTSISAGLGMAVA ++ GK NNVI+VIGDG+++ G AYEAMNNAG ++S LIV+LNDN     P
Sbjct:   90 RRDRIRTLRTGGGLSGFTKRTESDHDPFGAGHSSTSISAGLGMAVASELAGKKNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP 186          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_RHOPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris GN=dxs PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.470e-30
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLP 291
            RR R+ T+R   GL+GF KR ES HD FGAGHSSTSISAGLGMAVA ++ GK NNVI+VIGDG+++ G AYEAMNNAG ++S LIV+LNDN     P
Sbjct:   90 RRDRIRTLRTGGGLSGFTKRTESDHDPFGAGHSSTSISAGLGMAVASELAGKKNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP 186          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_RHOPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisB5) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.532e-30
Identity = 64/97 (65.98%), Postives = 76/97 (78.35%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLP 291
            RR R+ T+R   GL+GF KR ES +D FGA HSSTSISAGLGMAVARD+ G NNNVI+VIGDG+++ G AYEAMNNAG ++S LIV+LNDN     P
Sbjct:   87 RRDRIRTLRTAGGLSGFTKRTESDYDPFGAAHSSTSISAGLGMAVARDLAGGNNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP 183          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 4.532e-30
Identity = 65/102 (63.73%), Postives = 80/102 (78.43%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDN-KQVSLPTATL 303
            RR R+ T+R+T GL+GF KR ES +D FGA HSSTSISAGLGMAVA D+ G+  NVI+VIGDG+M+ G AYEAMNNAG LD+ LIV+LNDN   ++ PT  +
Sbjct:   89 RRDRIRTLRQTGGLSGFTKRTESEYDPFGAAHSSTSISAGLGMAVASDLSGEKRNVIAVIGDGSMSAGMAYEAMNNAGALDARLIVILNDNDMSIAPPTGAM 190          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_RHOP5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodopseudomonas palustris (strain BisA53) GN=dxs PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.919e-30
Identity = 64/97 (65.98%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDNKQVSLP 291
            RR R+ T+R   GL+GF KR ES HD FGAGHSSTSISAGLGMAVA D+ G  NNVI+VIGDG+++ G AYEAMNNAG ++S LIV+LNDN     P
Sbjct:   90 RRDRIRTLRTGGGLSGFTKRTESDHDPFGAGHSSTSISAGLGMAVASDLAGTKNNVIAVIGDGSISAGMAYEAMNNAGAMNSRLIVILNDNNMSIAP 186          
BLAST of EY728616 vs. ExPASy Swiss-Prot
Match: DXS_RHILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium loti GN=dxs PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 5.919e-30
Identity = 65/102 (63.73%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 RRSRMNTMRKTSGLAGFPKREESVHDAFGAGHSSTSISAGLGMAVARDILGKNNNVISVIGDGAMTGGQAYEAMNNAGFLDSNLIVVLNDN-KQVSLPTATL 303
            RR R+ T+R+  GL+GF +R ES +D FGA HSSTSISAGLGMA ARD+ G  NNVI+VIGDGAM+ G AYEAMNNAG LD+ LIV+LNDN   ++ PT  +
Sbjct:   90 RRDRIRTLRQEGGLSGFTRRAESEYDPFGAAHSSTSISAGLGMAAARDLSGGRNNVIAVIGDGAMSAGMAYEAMNNAGALDARLIVILNDNDMSIAPPTGAM 191          
The following BLAST results are available for this feature:
BLAST of EY728616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DXS_ARATH4.302e-4477.57Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN1.240e-4375.70Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ1.896e-4174.77Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_MAGSA9.132e-3169.071-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_RHOPT3.470e-3065.981-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPA3.470e-3065.981-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHOPS4.532e-3065.981-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_OCHA44.532e-3063.731-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]
DXS_RHOP55.919e-3065.981-deoxy-D-xylulose-5-phosphate synthase OS=Rhodops... [more]
DXS_RHILO5.919e-3063.731-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-006-C07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728616 ID=EY728616; Name=EY728616; organism=Citrus sinensis; type=EST; length=472bp
AGAAGATCCAGAATGAACACCATGAGGAAGACTTCGGGGCTTGCAGGATT
CCCCAAAAGAGAGGAAAGCGTTCATGATGCATTTGGTGCAGGACATAGTT
CCACAAGCATCTCTGCTGGTCTTGGTATGGCTGTCGCAAGGGATATTCTG
GGGAAGAACAATAATGTCATTTCCGTGATTGGAGATGGGGCCATGACTGG
CGGACAAGCATATGAAGCAATGAATAATGCAGGATTTCTTGATTCTAACC
TGATTGTTGTGCTGAATGACAATAAACAAGTATCTCTACCCACAGCTACG
CTGGATGGTCCTGCAACTCCGGGTTGGAGCCCTCAGCAGCGCTTTAAGCA
AGCTCCAGGCGAGCGCTAACTTCCGCGAACTTCGGTGAGGCCGCCAAAAC
CCTCCTAAGCCATTGGGTGGGCCCACCCCTGAAGTGCCTGCAAGGGTCGA
TGAGTCGCCCGAGGACTGATTA
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