EY728589

Overview
NameEY728589
Unique NameEY728589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7546 contig Csv1_Contig7546:231..1091. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 2.792e-91
Identity = 162/169 (95.86%), Postives = 167/169 (98.82%), Query Frame = 1
Query:    4 RVRALFKNLSRGQNEASRMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 510
            +V+ALFKNLSRGQN+ASRMS+ETGPYVFHYIIEGRVCYLTMCDR+YPKKLAFQYLEDLKNEFERVNG  IETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV
Sbjct:   35 QVKALFKNLSRGQNDASRMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIV 203          

HSP 2 Score: 28.1054 bits (61), Expect = 2.792e-91
Identity = 9/17 (52.94%), Postives = 14/17 (82.35%), Query Frame = 2
Query:  506 LCWXVVFIVFWLKTKLW 556
            + + VVF++FW+K KLW
Sbjct:  202 IVFGVVFLLFWVKNKLW 218          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SC22B_RAT (Vesicle-trafficking protein SEC22b OS=Rattus norvegicus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 7.898e-39
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 507
            K L R  NE S  R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:   38 KQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SC22B_PONAB (Vesicle-trafficking protein SEC22b OS=Pongo abelii GN=SEC22B PE=2 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 7.898e-39
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 507
            K L R  NE S  R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:   38 KQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SC22B_MOUSE (Vesicle-trafficking protein SEC22b OS=Mus musculus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 7.898e-39
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 507
            K L R  NE S  R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:   38 KQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SC22B_HUMAN (Vesicle-trafficking protein SEC22b OS=Homo sapiens GN=SEC22B PE=1 SV=3)

HSP 1 Score: 160.999 bits (406), Expect = 7.898e-39
Identity = 82/164 (50.00%), Postives = 111/164 (67.68%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 507
            K L R  NE S  R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:   38 KQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SC22B_CHICK (Vesicle-trafficking protein SEC22b OS=Gallus gallus GN=SEC22B PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.032e-38
Identity = 81/164 (49.39%), Postives = 112/164 (68.29%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 507
            K L R  NE S  R ++E G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL++EF+  +G ++ T +RPY+FI+FDT+IQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:   38 KQLFRKLNEQSPTRCTLEAGAMAFHYIIEKGVCYLVLCEAAFPKKLAFAYLEDLQSEFDEQHGKKVPTVSRPYSFIEFDTYIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SC22B_CRIGR (Vesicle-trafficking protein SEC22b OS=Cricetulus griseus GN=Sec22b PE=1 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 5.120e-38
Identity = 81/164 (49.39%), Postives = 110/164 (67.07%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 507
            K L R  NE S  R ++  G   FHYIIE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FDTFIQKTKKLY D+R +RN+  +N EL +V +IM  N++EVL  GE L  +   ++ L+S S+ Y   AK LN ++   K A VA+
Sbjct:   38 KQLFRKLNEQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: SC22B_XENTR (Vesicle-trafficking protein SEC22b OS=Xenopus tropicalis GN=sec22b PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.647e-36
Identity = 78/164 (47.56%), Postives = 110/164 (67.07%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAI 507
            K L R  NE S  R ++E G   FHY+IE  VCYL +C+ A+PKKLAF YLEDL +EF+  +G ++ T +RPY+FI+FD +IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L++ S+ Y   AK LN ++   K A VA+
Sbjct:   38 KQLFRKLNEQSPTRCTLEAGAMTFHYLIEKGVCYLVLCEAAFPKKLAFAYLEDLFSEFDEQHGKKVPTVSRPYSFIEFDNYIQKTKKSYIDSRARRNLSSVNTELQDVQRIMVANIEEVLLRGEALSALDSKASNLSTLSKKYRQDAKYLNMRSTYAKLAAVAV 201          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: S22BA_DANRE (Vesicle-trafficking protein SEC22b-A OS=Danio rerio GN=sec22ba PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 2.151e-36
Identity = 77/166 (46.39%), Postives = 109/166 (65.66%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVL 513
            K L R  NE S  R ++E G   FHY+IE  VCYL +C+  +PKKLAF YLEDL+ EF    GA++ + +RPY+FI+FDT+IQKT K Y D+R +RN+  +N EL++V +IM  N++EVL  GE L  +   +S L+S S+ Y   AK LN ++   K A  A+++
Sbjct:   38 KQLCRKLNEQSPARCTLEAGKMCFHYVIEKGVCYLALCEAGFPKKLAFAYLEDLEGEFSEQYGAKVPSVSRPYSFIEFDTYIQKTIKSYIDSRARRNLGNINSELHDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKYRSDAKYLNTRSTYAKVAAGAVII 203          
BLAST of EY728589 vs. ExPASy Swiss-Prot
Match: S22BB_DANRE (Vesicle-trafficking protein SEC22b-B OS=Danio rerio GN=sec22bb PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 77/160 (48.12%), Postives = 106/160 (66.25%), Query Frame = 1
Query:   22 KNLSRGQNEAS--RMSIETGPYVFHYIIEGRVCYLTMCDRAYPKKLAFQYLEDLKNEFERVNGAQIETAARPYAFIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWA 495
            K L R  NE S  R ++E G   FHY+IE  VCYL +C+  +PKKLAF YLEDL+ EF   +G ++ T +RPY+FI+FDT+IQKTKK Y D+R +RN++ +N EL +V +IM  N++EVL  GE L  +   +S L+S S+ Y   AK LN ++   K A
Sbjct:   38 KQLFRKLNEQSPNRCTLEAGSMSFHYVIEKGVCYLVLCEAGFPKKLAFAYLEDLQAEFHEQHGKKVPTVSRPYSFIEFDTYIQKTKKSYIDSRARRNLSNINTELQDVQRIMVANIEEVLQRGEALSALDSKASNLSSLSKKYRSDAKYLNTRSTYAKLA 197          
The following BLAST results are available for this feature:
BLAST of EY728589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SEC22_ARATH2.792e-9195.8625.3 kDa vesicle transport protein OS=Arabidopsis ... [more]
SC22B_RAT7.898e-3950.00Vesicle-trafficking protein SEC22b OS=Rattus norve... [more]
SC22B_PONAB7.898e-3950.00Vesicle-trafficking protein SEC22b OS=Pongo abelii... [more]
SC22B_MOUSE7.898e-3950.00Vesicle-trafficking protein SEC22b OS=Mus musculus... [more]
SC22B_HUMAN7.898e-3950.00Vesicle-trafficking protein SEC22b OS=Homo sapiens... [more]
SC22B_CHICK1.032e-3849.39Vesicle-trafficking protein SEC22b OS=Gallus gallu... [more]
SC22B_CRIGR5.120e-3849.39Vesicle-trafficking protein SEC22b OS=Cricetulus g... [more]
SC22B_XENTR1.647e-3647.56Vesicle-trafficking protein SEC22b OS=Xenopus trop... [more]
S22BA_DANRE2.151e-3646.39Vesicle-trafficking protein SEC22b-A OS=Danio reri... [more]
S22BB_DANRE6.258e-3648.13Vesicle-trafficking protein SEC22b-B OS=Danio reri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-H06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728589 ID=EY728589; Name=EY728589; organism=Citrus sinensis; type=EST; length=861bp
CCACGCGTCCGGGCCTTGTTTAAGAATCTCTCGAGAGGCCAGAATGAGGC
TTCAAGGATGTCAATTGAGACAGGACCTTATGTTTTCCATTATATCATTG
AAGGACGTGTTTGTTACTTGACAATGTGCGACCGTGCTTATCCCAAAAAG
CTGGCCTTTCAATACTTGGAAGACCTCAAGAACGAATTTGAGCGTGTTAA
TGGGGCTCAGATTGAAACTGCTGCCAGGCCTTATGCTTTCATAAAATTTG
ATACATTCATACAGAAAACAAAGAAATTGTACCAGGACACACGTACCCAG
CGGAATATTGCAAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAAT
GACCCGGAATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGG
TCAGTGAAATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGCTGAT
AAGGCAAAAGATTTGAATCGACAGGCTTTAATTCGGAAATGGGCTCCTGT
GGCCATTGTGTTGGNGGGTGGTCTTCATTGTCTTTTGGCTCAAAACAAAG
CTATGGTGATTCAGTTGCCCTAATGCGGTTCTAATAGTTGCACATTGTGC
CTGGGTTCCTCTGCGTCAATGTGGGTTGCTGGTGTTCTTGGCTCGGTGTC
AACACTTCAAAGGCATCAGATTTCATCGACACTTGTTTCTGTTCTTGACA
CAATTTAGCGCATAGTCCAGTGGGTCCCCATAGGAAGTAGGATAAATCTC
CCTGGTGGATTGTGTTAGAGAAACCCTTTTAAAATGTGCGATGTGCCGAG
TATATTATGTCAAATTTTGAGAACCTAGCCTCGGCCTTTACGAGGCTTTA
TGAACCCCCTC
back to top