EY728580

Overview
NameEY728580
Unique NameEY728580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11799 contig Csv1_Contig11799:2..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728580 vs. ExPASy Swiss-Prot
Match: Y3739_ARATH (Uncharacterized membrane protein At3g27390 OS=Arabidopsis thaliana GN=At3g27390 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.075e-33
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:  417 DVPVISVVALCKSPYMLFKGWHRLFHDLIGREGPFLETICVPLAGLAIILWPLAVVGAVLGSMVTSIFLGAYAGGGCLSGILPLVRASLYY 689
            D PVIS+VA+CKSPYMLFKGWHRLFHDLIGREGPFLET+CVP+AGLAI+LWPLAV GAV+GS+++SIFLGAYA      G++    +S YY
Sbjct:  195 DPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIAGLAILLWPLAVTGAVIGSVISSIFLGAYA------GVVSYQESSFYY 279

HSP 2 Score: 83.1889 bits (204), Expect = 2.154e-15
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   13 YDGTWSTIKHSFTIVRDFKDVCFHSYFSLMDDLRQKQAPDGKYYEIR 153
            YDGTWST++ SFT+VRDFKDVCFHSYFSLMD+L+Q   PD KYYEIR
Sbjct:  132 YDGTWSTMQRSFTVVRDFKDVCFHSYFSLMDELKQ-SCPDRKYYEIR 177

HSP 3 Score: 77.7962 bits (190), Expect = 9.051e-14
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:  613 VSSLVL--MQGVVVYQESSLWFGLRYIIAALFIYDEYSHDILDMPEGSCFPKPQYRKE 780
            +SS+ L    GVV YQESS ++GL YI+A++ IYDEYS DILD+PEGSCFP+P+YR++
Sbjct:  258 ISSIFLGAYAGVVSYQESSFYYGLCYIVASVSIYDEYSTDILDLPEGSCFPRPKYRRK 315
The following BLAST results are available for this feature:
BLAST of EY728580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3739_ARATH5.075e-3372.53Uncharacterized membrane protein At3g27390 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-G04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728580 ID=EY728580; Name=EY728580; organism=Citrus sinensis; type=EST; length=877bp
CACGCGTCCGTTTACGATGGGACTTGGAGCACGATTAAACACAGCTTCAC
TATTGTCAGAGATTTTAAAGATGTCTGTTTCCATTCCTACTTTTCACTTA
TGGATGATCTGCGACAGAAACAGGCTCCAGATGGAAAATATTATGAGATA
AGGTGTGCTGTTTGCTTTTGCTGCTAAGAAATTCCTTTTTTAAGTCCATG
TTGCTGCTATTATCCAATTCACGACAATCACTAGGACATCACTCGGTATA
ATTTTTAGTTAACAGTGAGAATTAACCATCAAATCTGTTCATTTAGTACT
TGTTATCCACTTTTGAATATCTCTTTTGCCTTTTAGATTGCCCTTTTCAT
TGACCGTGTTTCAGATTGCTCTATATTCCTGGTGCCATCATTGCTGGGGG
GCTTGGTGTCCTGATTGATGTGCCAGTGATCTCAGTTGTTGCCCTATGCA
AAAGCCCTTATATGCTCTTTAAGGGGTGGCATCGTTTGTTTCATGACCTT
ATAGGCCGAGAAGGTCCTTTCTTAGAGACTATATGCGTACCATTAGCTGG
CCTTGCTATCATACTCTGGCCATTGGCTGTTGTTGGGGCAGTTTTGGGCT
CCATGGTGACCAGTATCTTCCTTGGTGCTTATGCAGGGGGTGGTTGTTTA
TCAGGAATCCTCCCTTTGGTTCGGGCTTCGCTATATTATTGCAGCCTTGT
TCATTTATGATGAATACAGCCATGACATACTTGACATGCCAGAAGGATCC
TGCTTTCCTAAGCCCCAGTATCGAAAAGAGGCANATCTCTCGCGGACCAG
TACTTTCTCANGGCCTACCTCTTTCAAGATCTTCCCTCTCGCCCAATTCA
TTTAGGAACCATTGAGTTGAAGCCCGT
back to top