EY728571

Overview
NameEY728571
Unique NameEY728571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB1_RAT (5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG 460
            P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG 185          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 43/112 (38.39%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG 460
            P  F W  GG+ V LSGSF  WS+ +P++ S+     F  I  LP G HQYKF+VDG+W HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSQNN---FVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG 185          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB1_BOVIN (5'-AMP-activated protein kinase subunit beta-1 OS=Bos taurus GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG 460
            P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W HD ++P V+   G VN V I V + D  V + +  ++    +V ++   P G
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWTHDPSEPVVTSQLGTVNNV-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG 185          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB1_PONAB (5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG 460
            P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG 185          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB1_HUMAN (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 74.7146 bits (182), Expect = 6.864e-13
Identity = 43/112 (38.39%), Postives = 62/112 (55.36%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVNCVYIAVPQPDM-VPNTISPETSGNMEVDDVVMRPEG 460
            P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF+VDG+W HD ++P V+   G VN + I V + D  V + +  ++    +V ++   P G
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI-IQVKKTDFEVFDALMVDSQKCSDVSELSSSPPG 185          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB1_PIG (5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.406e-12
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVN 355
            P  F W  GG+ V LSGSF  WS+ +P++ S      F  I  LP G HQYKF VDG+W HD ++P V+   G VN
Sbjct:   44 PTVFRWTGGGKEVYLSGSFNNWSK-LPLTRSHNN---FVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVN 115          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVN 355
            P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W HD ++P V+   G +N
Sbjct:   77 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTIN 149          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVN 355
            P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W HD ++P V+   G +N
Sbjct:   77 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTIN 149          
BLAST of EY728571 vs. ExPASy Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.449e-12
Identity = 33/76 (43.42%), Postives = 43/76 (56.58%), Query Frame = 2
Query:  128 PVRFIWPNGGRRVSLSGSFTRWSEPMPMSPSEGCPAVFQIICRLPPGHHQYKFYVDGEWRHDENQPHVSGNYGVVN 355
            P    W  GG+ V +SGSF  WS  +P+  S      F  I  LP G HQYKF+VDG+W HD ++P V+   G +N
Sbjct:   78 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHND---FVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTIN 150          
The following BLAST results are available for this feature:
BLAST of EY728571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AAKB1_RAT4.024e-1338.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_MOUSE4.024e-1338.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_BOVIN5.255e-1339.295'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PONAB6.864e-1338.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_HUMAN6.864e-1338.395'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PIG3.406e-1247.375'-AMP-activated protein kinase subunit beta-1 (Fr... [more]
AAKB2_RAT4.449e-1243.425'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_MOUSE4.449e-1243.425'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_HUMAN4.449e-1243.425'-AMP-activated protein kinase subunit beta-2 OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-F05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728571 ID=EY728571; Name=EY728571; organism=Citrus sinensis; type=EST; length=818bp
CCACGCGTCCGTGATTTGGTACTAGAATTTGTGTGCATAAGTATTTATAT
AACTTTGGAAGGAAATGTATAATTCTGGTCTGAATACTGGTCACGAAAAC
AGTGGGGTAGTGGGTTCAATCTTGGTTCCGGTCCGGTTTATTTGGCCTAA
TGGGGGGAGGAGAGTTTCACTCAGTGGCTCGTTCACCAGGTGGTCAGAGC
CTATGCCTATGTCCCCATCTGAAGGATGTCCTGCTGTTTTTCAAATCATT
TGCAGGTTGCCACCTGGGCATCACCAGTACAAGTTCTATGTTGATGGAGA
ATGGCGGCATGATGAGAACCAGCCCCATGTGAGCGGGAATTATGGTGTAG
TGAATTGTGTATATATAGCTGTGCCACAACCAGATATGGTTCCTAACACC
ATCAGCCCTGAGACTTCTGGTAACATGGAGGTAGATGATGTTGTTATGCG
TCCGGAAGGTTTTGCACAATACTCAGAGGCTGATTTACAGCTTTCTCGTG
ATCGTATATCTTCATTCTTGTCCACACATACAGTATACGAGCTCCTTCCC
GACTCAGGCAAGGTCACTGCCTTGGATGTCAATTTAGCTGTGAAGCAAGC
ATTCATGTNCTCTATGAGCAGGGACTCCGATGGTCGCTCTTTGGGGATGA
CTCCGCGGCCGNNTTGTCGGGGTCCCTATTGCCTNNACNTCATNCCGATC
CAGAGAAAACGGGCGACCCCGGGCCCCACGCCCACGGCGGCACCACCCCA
CCCCCCACCCACCCCCCCCCATCAGCGCGACCGAGGGCCACCCCGCACGA
GACGCCAGGGCGGCGGAA
back to top