EY728566

Overview
NameEY728566
Unique NameEY728566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728566_ssr299 microsatellite EY728566_ssr299:299..310. BLAST: Citrus ESTs to SwissProt
Homology
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: YDHJ_ECOLI (Uncharacterized protein ydhJ OS=Escherichia coli (strain K12) GN=ydhJ PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.603e-18
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = 3
Query:    6 SFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDEIPTGVRL 266
            SFYV GYFEETKL  I EGAP  +TL  DN+ ++GHV SI   I D+   + ++L+ +V P   WVRLAQR+PVR  +D++P  V L
Sbjct:  187 SFYVIGYFEETKLRHIREGAPAQITLYSDNKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTL 273          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALTY (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella typhimurium GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALTI (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella typhi GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALSV (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella schwarzengrund (strain CVM19633) GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALPK (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella paratyphi A (strain AKU_12601) GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALPC (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella paratyphi C (strain RKS4594) GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALPB (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALPA (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella paratyphi A GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALNS (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella newport (strain SL254) GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
BLAST of EY728566 vs. ExPASy Swiss-Prot
Match: AAEA_SALHS (p-hydroxybenzoic acid efflux pump subunit aaeA OS=Salmonella heidelberg (strain SL476) GN=aaeA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 35/81 (43.21%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSFYVEGYFEETKLPGIHEGAPVTVTLMGDNRQIRGHVESIALGIADRERGTGANLLANVNPTFNWVRLAQRIPVRVKIDE 245
            +SFYV+ Y EETKL G+  G    +T +G NR ++G V+S+A G+ +    + A  +A ++    WVRLAQR+PVR+++DE
Sbjct:  189 NSFYVQAYMEETKLEGVRPGYRAEITPLGSNRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDE 269          
The following BLAST results are available for this feature:
BLAST of EY728566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
YDHJ_ECOLI1.603e-1851.72Uncharacterized protein ydhJ OS=Escherichia coli (... [more]
AAEA_SALTY8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALTI8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALSV8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALPK8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALPC8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALPB8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALPA8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALNS8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]
AAEA_SALHS8.233e-1543.21p-hydroxybenzoic acid efflux pump subunit aaeA OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728566 ID=EY728566; Name=EY728566; organism=Citrus sinensis; type=EST; length=881bp
CCAGCTCGTTCTACGTCGAAGGCTATTTCGAGGAAACCAAGCTGCCCGGC
ATCCACGAAGGCGCCCCCGTGACCGTGACGCTGATGGGTGACAACCGCCA
GATCCGCGGCCACGTCGAGAGCATCGCGCTGGGCATCGCCGACCGCGAAC
GCGGCACCGGCGCCAACCTGCTGGCCAACGTCAACCCGACCTTCAACTGG
GTGCGCCTGGCGCAGCGCATCCCGGTGCGCGTGAAGATCGACGAAATCCC
CACCGGCGTGCGCCTGGTGGCCGGCCAGACCGCCACCGTCGCGGTCGGCG
CCGCCGCCGCGCCCGCACAGACGCATACCGACGCGCGCCCACCGTCCTGA
ACACGCCTTTTTTGCGAACCCGCGAATCTCCTAGACAACGCCGAGCCGTA
GTCGCCATGATCACCACATGCTTCCTGCCGCTGATGCTGTCCGCCGCATT
GGCCGGATGCGCCGCCCGGGGCCCGGACTACCACGTGCCCGGCGGATCGG
CCGCCATCCGCCCATGAGCCCGCGGCCGGCCGCCGGGGCCGCGGCAAGGC
TCTTGTGAGCGCTAGGCGGGGGCGCGGCGGCGCCGGGCCCGCGCGCGCCA
GGCCGCCGCGACGCCACAGCGCGGGCCGGGCCTCACCGTGGCGTGGCGGG
CGCCCCGCGCGGTCCGGGGCGGGGCCCGCGGCGCGGGCGCGTCCCCGTCG
TGCCTGGGCGAGGGTGTTTCGGTGCAGCGGCGGGCCGCGGGGCGGCGCGG
CGCCCGGGCAGCGGCGGAGCGGCGCTGTCGCGGTTGGGTGCACGTAGAGG
CGCGCACGGCGCGGGCGAGACGTGGTGGTTCGCGTGTCGGGCGACTCCTC
GCACGGCGGCAAGCCCGGGCCGCCGCGAGCA
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