EY728557

Overview
NameEY728557
Unique NameEY728557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 2
Query:   83 PGHPGLRSNGAKPIKELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            P  P L +NGA    +   TNL + YLP  +  D    LF + GDI   K+++D++TG S GYGFV Y+D   A+ AI ++NG +L+ + I V  A
Sbjct:   23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.800e-13
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 2
Query:   83 PGHPGLRSNGAKPIKELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            P  P L +NGA    +   TNL + YLP  +  D    LF + GDI   K+++D++TG S GYGFV Y+D   A+ AI ++NG +L+ + I V  A
Sbjct:   23 PNGPLLGTNGATDDSK---TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.575e-13
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  128 ELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            ++  TNL + YLP  +  D L  LFS+ G++  AK+I+D+V G S GYGFV Y + + A  AI ++NG RL+ + I V VA
Sbjct:   16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVA 96          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.292e-12
Identity = 37/77 (48.05%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  140 TNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            T LYIG L P  D+  L   FS+F  +  A+V+ ++VTG S+GYGFV +     AN+AI++MNG  L G NI+V VA
Sbjct:   31 TKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.878e-12
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:  128 ELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            ++  TNL + YLP  +  D L  LFS+ G++  AK+I+D+V G S GYGFV Y + + A  AI ++NG RL+ + I V  A
Sbjct:   16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFA 96          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 2
Query:   80 TPGHPGLRSNGAKPIK----ELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            T   P   +N + P++    E   TNL + YLP  +  + L  LF + G+I   K+++D++TG S GYGFV Y D + A  AI ++NG RL+ + I V  A
Sbjct:   43 TANCPNTINNCSSPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA 143          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.759e-12
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 2
Query:  128 ELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            ++  TNL + YLP  +  D L  LFS+ G++  AK+I+D+V G S GYGFV Y   + A  AI ++NG RL+ + I V  A
Sbjct:   16 DIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.910e-12
Identity = 34/81 (41.98%), Postives = 51/81 (62.96%), Query Frame = 2
Query:  128 ELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            ++  TNL + YLP  +  + L  LFS+ G++  AK+I+D+V G S GYGFV Y   + A  AI+++NG RL+ + I V  A
Sbjct:   16 DIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA 96          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.413e-12
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 2
Query:  110 GAKPIKELDDTN-LYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            GA+  + +D +N +Y+G L   +DD  L +LFS  G++V AKV+ DR +G S+G+GFV Y+  +  N+AI S+NG  L+GR+I V  A
Sbjct:  197 GARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284          
BLAST of EY728557 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.413e-12
Identity = 36/96 (37.50%), Postives = 54/96 (56.25%), Query Frame = 2
Query:   83 PGHPGLRSNGAKPIKELDDTNLYIGYLPPTLDDDGLIKLFSTFGDIVMAKVIKDRVTGMSKGYGFVKYADIQMANNAIASMNGYRLEGRNIAVRVA 370
            PG  G+  NG     +   TNL + YLP  +  +    LF + G+I   K+++D++TG S GYGFV Y D   A+ AI ++NG +L+ + I V  A
Sbjct:   17 PGSVGIL-NGTNGAADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA 111          
The following BLAST results are available for this feature:
BLAST of EY728557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
ELAV3_MOUSE5.800e-1340.63ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1... [more]
ELAV3_HUMAN5.800e-1340.63ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV1_XENTR7.575e-1344.44ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
RT19_ARATH1.292e-1248.0540S ribosomal protein S19, mitochondrial OS=Arabid... [more]
ELV1B_XENLA2.878e-1243.21ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
ELAV2_XENTR3.759e-1237.62ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
ELAV1_HUMAN3.759e-1243.21ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
ELAV1_MOUSE4.910e-1241.98ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
ROC2_NICPL6.413e-1244.3231 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV3_XENTR6.413e-1237.50ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728557 ID=EY728557; Name=EY728557; organism=Citrus sinensis; type=EST; length=872bp
CACGCGTCCGCGGACGCGTGGGGGCAGTGGCAGTTCTGGAAGTAATCCTC
CTTGGGCTAATAATTCAGGCAGTTCTGGGACTCCAGGGCATCCTGGACTA
AGGTCAAATGGAGCTAAACCCATCAAAGAATTGGATGATACAAACTTGTA
TATTGGATATTTGCCACCGACGCTTGATGATGATGGTTTGATTAAGTTGT
TTTCTACTTTTGGTGATATTGTGATGGCTAAAGTTATTAAAGACCGGGTT
ACAGGAATGAGCAAAGGTTATGGTTTTGTGAAGTATGCTGATATTCAGAT
GGCCAATAATGCTATTGCAAGCATGAATGGTTACCGTCTTGAGGGGCGAA
ACATAGCTGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTACTGTGCCTCCG
GGCCCTCCAACTTCAACAATGCCCACCTACCCTGTGTCTGCTCCACCAGT
TGGTGGGTATCCATCTCAGCAATATGCACCACGCGGTGCTCTTCCAAATC
CACCAGCAGCGAGCTATACGGGGGCTCCTGTTCCTTGGGGGAGCACAAAT
ACCTCCGCGGTATGCTCGTGGTGTGCTCCCGCCTCCTGGGTGCACGCAGT
ATCCATCCCGCCCCTGGTCGACGATAGCTGGGGTAGGAGTAGAAGATCCG
TCGAGGAGGGTGGAGGGTCGCGCCTGTAGTCTGATGGCACCCTGGATAGC
CCAGCGCGGAGGGCGGTGTGGAGTGGTTGGGAGACCGTGTCCCCAGCGGA
GGAGGACGGGGGGGAGGGAGCGGGGGGGTCGGACGAAGCGGGAAAGAGGT
GTAGGAGTGTCGGACGTCGCCCTAGACAAACACTCATTTGGTCGGGGGCG
GGGGGTGTGTGCCGAGGATGGG
back to top