EY728520

Overview
NameEY728520
Unique NameEY728520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728520_ssr781 microsatellite EY728520_ssr781:781..790. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728520 vs. ExPASy Swiss-Prot
Match: SFR16_RAT (Splicing factor, arginine/serine-rich 16 OS=Rattus norvegicus GN=Sfrs16 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   16 MWHEARRSERKVHDMMDAARKRAQRRAVFLAKRRGDPQQSIQVIGSRSRVYRDDGLYQATEDQQGLIPWNGKQDVLIDRFDGRALLDFIREPAKHLHAQKKSXXXXXXXXFVNFERYRDLIKH 384
            MWHEAR+ ERK+  MM   +KRA+RR  +  K + DP Q +QV G   +V+ D  +  A E    ++PW G  + +IDRFD RA LD I +    L     S          N+ERYR L+++
Sbjct:    1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPL-LTTISPEQESDERKCNYERYRGLVQN 122
[Close]
BLAST of EY728520 vs. ExPASy Swiss-Prot
Match: SFR16_MOUSE (Splicing factor, arginine/serine-rich 16 OS=Mus musculus GN=Sfrs16 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   16 MWHEARRSERKVHDMMDAARKRAQRRAVFLAKRRGDPQQSIQVIGSRSRVYRDDGLYQATEDQQGLIPWNGKQDVLIDRFDGRALLDFIREPAKHLHAQKKSXXXXXXXXFVNFERYRDLIKH 384
            MWHEAR+ ERK+  MM   +KRA+RR  +  K + DP Q +QV G   +V+ D  +  A E    ++PW G  + +IDRFD RA LD I +    L     S          N+ERYR L+++
Sbjct:    1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPL-LTTISPEQESDERKCNYERYRGLVQN 122
[Close]
BLAST of EY728520 vs. ExPASy Swiss-Prot
Match: SFR16_HUMAN (Splicing factor, arginine/serine-rich 16 OS=Homo sapiens GN=SFRS16 PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   16 MWHEARRSERKVHDMMDAARKRAQRRAVFLAKRRGDPQQSIQVIGSRSRVYRDDGLYQATEDQQGLIPWNGKQDVLIDRFDGRALLDFIREPAKHLHAQKKSXXXXXXXXFVNFERYRDLIKH 384
            MWHEAR+ ERK+  MM   +KRA+RR  +  K + DP Q +QV G   +V+ D  +  A E    ++PW G  + +IDRFD RA LD I +    L     S          N+ERYR L+++
Sbjct:    1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPL-LTTISPEQESDERKCNYERYRGLVQN 122
[Close]
BLAST of EY728520 vs. ExPASy Swiss-Prot
Match: SFR16_BOVIN (Splicing factor, arginine/serine-rich 16 OS=Bos taurus GN=SFRS16 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.696e-15
Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1 
Query:   16 MWHEARRSERKVHDMMDAARKRAQRRAVFLAKRRGDPQQSIQVIGSRSRVYRDDGLYQATEDQQGLIPWNGKQDVLIDRFDGRALLDFIREPAKHLHAQKKSXXXXXXXXFVNFERYRDLIKH 384
            MWHEAR+ ERK+  MM   +KRA+RR  +  K + DP Q +QV G   +V+ D  +  A E    ++PW G  + +IDRFD RA LD I +    L     S          N+ERYR L+++
Sbjct:    1 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAAESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPL-LTTISPEQESDERKCNYERYRGLVQN 122
The following BLAST results are available for this feature:
BLAST of EY728520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SFR16_RAT1.696e-1539.02Splicing factor, arginine/serine-rich 16 OS=Rattus... [more]
SFR16_MOUSE1.696e-1539.02Splicing factor, arginine/serine-rich 16 OS=Mus mu... [more]
SFR16_HUMAN1.696e-1539.02Splicing factor, arginine/serine-rich 16 OS=Homo s... [more]
SFR16_BOVIN1.696e-1539.02Splicing factor, arginine/serine-rich 16 OS=Bos ta... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-005-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728520 ID=EY728520; Name=EY728520; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGAAAGATGTGGCACGAGGCAAGAAGATCCGAGAGAAAAGT
GCACGACATGATGGACGCTGCTCGAAAGCGAGCCCAGAGACGCGCCGTCT
TCTTGGCAAAGCGGCGCGGCGATCCTCAGCAGTCCATTCAGGTCATCGGC
TCACGCTCCCGCGTCTATCGTGACGATGGCCTCTACCAGGCGACGGAGGA
CCAACAAGGCCTGATACCTTGGAATGGGAAACAAGATGTTTTGATTGATA
GATTTGATGGTCGGGCCCTTCTAGATTTCATTAGGGAACCTGCGAAGCAT
CTTCATGCTCAAAAAAAGTCTGAAGAAGAGGAAGAACTAGAAGAGTTTGT
TAATTTTGAGCGTTATCGGGATTTAATTAAGCATCGACGTAGAGGATGTC
GTTACTGATGAGGAGGGTTTGCAACACGTAAATCAAGAGTTGGAGGCAAA
GACTGCTGCCCCTTTCACATCTGAAAGATTTCATCCGTCACAACCATCTG
CAAGCAAGGGGACATACTCACAGGTTGGATTCTCTTATGATGGGAATGGA
AGTGAGGGACAACATTTTCCAGATGATGAAGACGAGGAGGATGAAGACGA
GGATGATGATGAGGATGATNATANTAGTGATTGATAGCATGATGAAGGAA
TGGATATAATAGCAAAAGAAATTGGTTGCAAAGGTATGGCTGGGTTGGTT
ATATGGGTAAGAAGCCAAAGAGGGAAAGAAAGGGGAAAGGAAGCCATGAA
GGTGATCCTGCAATTTGGGAAGCGGATCGCGAGAGAGAGAAAGGCGCTCC
CATTAAGGGGAGAGGGAGAGAAGCTCTGGCGTTCTGGAGCCGAGTTCCCG
CGCGACTCTTACGGGGCCTCGAGTATCCGAGTTTTGAGTTGT
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